Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2122

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
2,670,110	+		BT2121	0.36	-0.4
2,670,188	+		BT2121	0.42	-0.6
2,670,189	-		BT2121	0.42	+0.5
2,670,192	-		BT2121	0.42	-0.8
2,670,298	+		BT2121	0.50	+0.7
2,670,394	-		BT2121	0.57	-0.9
2,670,417	-		BT2121	0.59	-0.8
2,670,432	+		BT2121	0.60	+0.2
2,670,432	+		BT2121	0.60	-0.9
2,670,437	+		BT2121	0.60	+2.2
2,670,438	-		BT2121	0.60	-0.2
2,670,438	-		BT2121	0.60	-2.5
2,670,438	-		BT2121	0.60	-0.7
2,670,440	+		BT2121	0.60	+0.5
2,670,562	+		BT2121	0.69	-0.1
2,670,670	-		BT2121	0.77	-0.5
2,670,804	-		BT2121	0.87	+0.1
2,670,804	-		BT2121	0.87	-1.3
2,670,857	+				+1.4
2,670,861	+				-0.6
2,670,862	-				-1.2
2,670,871	+				-0.9
2,670,977	+				-0.8
2,670,978	-				-2.3
2,670,978	-				+1.1
2,670,982	-				-0.1
2,671,069	+				-2.2
2,672,593	+		BT2122	0.87	+0.5
2,672,619	+		BT2122	0.89	-1.7
2,672,619	+		BT2122	0.89	-0.2
2,672,683	+				-1.2
2,672,702	+				+0.2