Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1621

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
1,994,111	-		BT1620	0.69	+0.6
1,994,111	-		BT1620	0.69	-2.0
1,994,157	+		BT1620	0.72	+1.7
1,994,157	+		BT1620	0.72	+0.2
1,994,157	+		BT1620	0.72	-2.1
1,994,158	-		BT1620	0.72	-1.5
1,994,194	+		BT1620	0.74	-2.2
1,994,359	+		BT1620	0.82	+0.3
1,994,411	+		BT1620	0.85	+0.7
1,994,492	-		BT1620	0.90	+0.9
1,994,492	-		BT1620	0.90	-0.1
1,994,495	+		BT1620	0.90	+0.7
1,994,588	+				+1.6
1,994,599	+				-1.2
1,994,743	+				+2.0
1,994,795	-				+2.1
1,994,817	-				-2.0
1,994,858	+				-0.4
1,994,859	-				-1.5
1,994,885	-				+0.8
1,994,973	-				-1.8
1,994,973	-				-0.3
1,995,013	-				-1.7
1,995,067	-				-0.6
1,995,110	-				-0.3
1,995,138	-		BT1621	0.10	-0.5
1,995,321	+		BT1621	0.22	+0.5
1,995,321	+		BT1621	0.22	-0.0
1,995,501	-		BT1621	0.34	-0.3
1,995,614	+		BT1621	0.41	-0.1
1,995,615	-		BT1621	0.41	-1.1
1,995,616	+		BT1621	0.41	+0.1
1,995,617	-		BT1621	0.41	+0.0
1,995,684	+		BT1621	0.45	+0.7
1,995,786	+		BT1621	0.52	+0.3
1,995,832	-		BT1621	0.55	-0.3
1,995,843	+		BT1621	0.55	-3.1
1,995,867	-		BT1621	0.57	+0.3
1,995,870	+		BT1621	0.57	+0.7
1,995,870	+		BT1621	0.57	+1.0
1,995,871	-		BT1621	0.57	-0.3
1,995,975	+		BT1621	0.64	-2.6
1,996,044	+		BT1621	0.68	-1.1
1,996,049	+		BT1621	0.69	+0.7
1,996,078	+		BT1621	0.71	+0.7
1,996,079	-		BT1621	0.71	-1.8
1,996,079	-		BT1621	0.71	+0.5
1,996,175	+		BT1621	0.77	-0.3
1,996,181	+		BT1621	0.77	+1.5
1,996,215	-		BT1621	0.79	+0.9
1,996,217	-		BT1621	0.79	-1.5
1,996,217	-		BT1621	0.79	+0.0
1,996,217	-		BT1621	0.79	+1.5
1,996,321	-		BT1621	0.86	-0.8
1,996,641	+				-0.9
1,996,724	-		BT1622	0.12	+0.4
1,996,755	+		BT1622	0.14	+0.8
1,996,805	+		BT1622	0.17	+0.3
1,996,967	+		BT1622	0.28	-0.5
1,996,967	+		BT1622	0.28	-1.5
1,997,082	+		BT1622	0.35	-1.3
1,997,082	+		BT1622	0.35	-0.4
1,997,083	-		BT1622	0.35	-0.5
1,997,083	-		BT1622	0.35	-1.3
1,997,086	-		BT1622	0.36	-0.4
1,997,100	+		BT1622	0.37	+0.2
1,997,102	+		BT1622	0.37	-1.5
1,997,197	-		BT1622	0.43	-0.2
1,997,205	+		BT1622	0.44	+0.0
1,997,220	+		BT1622	0.45	-1.0
1,997,352	+		BT1622	0.53	-2.0
1,997,430	+		BT1622	0.58	-0.3
1,997,430	+		BT1622	0.58	+0.2
1,997,430	+		BT1622	0.58	+1.3
1,997,526	-		BT1622	0.65	-0.4