Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1018

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
1,271,149	-		BT1017	0.54	+0.7
1,271,177	-		BT1017	0.56	+0.6
1,271,254	-		BT1017	0.60	-0.7
1,271,393	-		BT1017	0.67	-1.5
1,271,495	+		BT1017	0.72	-0.6
1,271,496	-		BT1017	0.72	-1.2
1,271,553	+		BT1017	0.75	-0.9
1,271,553	+				+1.7
1,271,554	-		BT1017	0.75	-0.3
1,271,694	-		BT1017	0.82	+0.1
1,271,709	-		BT1017	0.83	+0.1
1,271,772	-		BT1017	0.86	+0.0
1,271,818	+		BT1017	0.88	-0.3
1,271,819	-		BT1017	0.88	+0.0
1,271,819	-		BT1017	0.88	-0.7
1,271,870	+				+0.5
1,271,904	-				+0.0
1,272,116	+				+0.8
1,272,132	+				+1.0
1,272,154	+				-0.3
1,272,179	-				-0.7
1,272,179	-				+0.5
1,272,194	+				-1.0
1,272,371	-		BT1018	0.22	+0.9
1,272,473	-		BT1018	0.29	-1.7
1,272,521	+		BT1018	0.33	-0.7
1,272,661	+		BT1018	0.43	+1.0
1,272,767	-		BT1018	0.51	+0.2
1,272,953	-		BT1018	0.65	-1.0
1,272,962	-		BT1018	0.66	-0.4
1,272,968	-		BT1018	0.66	+1.5
1,273,015	+		BT1018	0.70	+1.0
1,273,045	+		BT1018	0.72	-0.0
1,273,137	+		BT1018	0.79	+0.0
1,273,304	-				-0.1
1,273,345	+				+0.7
1,273,437	+				-0.8
1,273,477	+				+0.3
1,273,479	+				-2.7
1,273,623	+				+0.9
1,273,624	-				-0.2
1,273,841	-		BT1019	0.14	-0.6
1,273,924	+		BT1019	0.17	-1.3
1,274,060	-		BT1019	0.22	-1.0
1,274,107	+		BT1019	0.23	-1.3
1,274,176	+		BT1019	0.26	+1.3
1,274,263	-		BT1019	0.29	-0.4
1,274,266	-		BT1019	0.29	-1.0
1,274,329	-		BT1019	0.31	+2.2
1,274,383	+		BT1019	0.33	+1.3
1,274,384	-		BT1019	0.33	-0.8
1,274,416	-		BT1019	0.35	-1.2