Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0721 and BT0722 are separated by 98 nucleotides BT0722 and BT0723 overlap by 4 nucleotides BT0723 and BT0724 are separated by 13 nucleotides BT0724 and BT0725 are separated by 303 nucleotides
BT0721: BT0721 - DNA repair and recombination protein, putative helicase (NCBI ptt file), at 894,960 to 897,506
BT0721
BT0722: BT0722 - conserved hypothetical protein, putative surface protein, function unknown (NCBI ptt file), at 897,605 to 898,225
BT0722
BT0723: BT0723 - hypothetical protein (NCBI ptt file), at 898,222 to 898,500
BT0723
BT0724: BT0724 - hypothetical protein (NCBI ptt file), at 898,514 to 898,726
BT0724
BT0725: BT0725 - dTDP-4-dehydrorhamnose reductase (NCBI ptt file), at 899,030 to 899,938
BT0725
Position (kb) 898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 897.365 kb on - strand at 897.383 kb on - strand at 897.588 kb on + strand at 897.606 kb on + strand at 898.121 kb on + strand, within BT0722 at 898.125 kb on - strand at 898.128 kb on + strand, within BT0722 at 898.142 kb on - strand, within BT0722 at 898.387 kb on + strand, within BT0723 at 898.430 kb on - strand, within BT0723 at 898.482 kb on + strand at 898.483 kb on - strand at 898.506 kb on - strand at 898.570 kb on - strand, within BT0724 at 898.752 kb on + strand at 898.890 kb on - strand at 898.909 kb on + strand at 898.914 kb on + strand at 898.987 kb on + strand at 898.988 kb on - strand at 899.014 kb on + strand at 899.103 kb on - strand at 899.310 kb on - strand, within BT0725 at 899.452 kb on - strand, within BT0725
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6 remove 897,365 - -1.3 897,383 - -0.2 897,588 + +0.8 897,606 + +1.3 898,121 + BT0722 0.83 -1.5 898,125 - +1.3 898,128 + BT0722 0.84 -0.1 898,142 - BT0722 0.86 -2.9 898,387 + BT0723 0.59 +0.1 898,430 - BT0723 0.75 -0.7 898,482 + +0.5 898,483 - -2.0 898,506 - +0.2 898,570 - BT0724 0.26 +0.9 898,752 + -1.0 898,890 - +0.6 898,909 + -1.0 898,914 + -0.5 898,987 + +0.0 898,988 - +1.1 899,014 + +1.3 899,103 - -0.1 899,310 - BT0725 0.31 +0.2 899,452 - BT0725 0.46 -0.6
Or see this region's nucleotide sequence