Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0431 and BT0432 are separated by 104 nucleotides BT0432 and tRNA-Thr are separated by 66 nucleotides tRNA-Thr and BT0433 are separated by 129 nucleotides
BT0431: BT0431 - conserved hypothetical protein with conserved domain (NCBI ptt file), at 518,130 to 519,167
BT0431
BT0432: BT0432 - putative endonuclease BB0411 (NCBI ptt file), at 519,272 to 520,150
BT0432
BT_t02: tRNA-Thr - tRNA-Thr (RefSeq), at 520,217 to 520,289
tRNA-Thr
BT0433: BT0433 - putative xylose repressor (NCBI ptt file), at 520,419 to 521,627
BT0433
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1
2 at 518.275 kb on - strand, within BT0431 at 518.278 kb on - strand, within BT0431 at 518.339 kb on + strand, within BT0431 at 518.341 kb on + strand, within BT0431 at 518.341 kb on + strand, within BT0431 at 518.342 kb on - strand, within BT0431 at 518.342 kb on - strand, within BT0431 at 518.445 kb on - strand, within BT0431 at 518.919 kb on - strand, within BT0431 at 519.030 kb on + strand, within BT0431 at 519.037 kb on - strand, within BT0431 at 519.037 kb on - strand, within BT0431 at 519.037 kb on - strand, within BT0431 at 519.085 kb on + strand at 519.086 kb on - strand at 519.270 kb on + strand at 519.271 kb on - strand at 519.321 kb on - strand at 519.390 kb on + strand, within BT0432 at 519.407 kb on + strand, within BT0432 at 519.426 kb on + strand, within BT0432 at 519.428 kb on + strand, within BT0432 at 519.649 kb on + strand, within BT0432 at 519.989 kb on + strand, within BT0432 at 520.003 kb on + strand, within BT0432 at 520.004 kb on - strand, within BT0432 at 520.020 kb on + strand, within BT0432 at 520.032 kb on + strand, within BT0432 at 520.039 kb on - strand, within BT0432 at 520.060 kb on + strand, within BT0432 at 520.081 kb on + strand at 520.172 kb on + strand at 520.246 kb on + strand, within tRNA-Thr at 520.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6 remove 518,275 - BT0431 0.14 -1.2 518,278 - BT0431 0.14 +0.8 518,339 + BT0431 0.20 -0.8 518,341 + BT0431 0.20 -1.1 518,341 + BT0431 0.20 +0.5 518,342 - BT0431 0.20 +1.8 518,342 - BT0431 0.20 -0.8 518,445 - BT0431 0.30 -2.2 518,919 - BT0431 0.76 +0.0 519,030 + BT0431 0.87 -1.1 519,037 - BT0431 0.87 +0.9 519,037 - BT0431 0.87 +0.6 519,037 - BT0431 0.87 -0.6 519,085 + -0.7 519,086 - -1.0 519,270 + +1.1 519,271 - -0.2 519,321 - +0.4 519,390 + BT0432 0.13 -1.3 519,407 + BT0432 0.15 +0.5 519,426 + BT0432 0.18 +1.7 519,428 + BT0432 0.18 +1.9 519,649 + BT0432 0.43 -1.0 519,989 + BT0432 0.82 -1.0 520,003 + BT0432 0.83 +0.2 520,004 - BT0432 0.83 -0.0 520,020 + BT0432 0.85 +0.1 520,032 + BT0432 0.86 -0.1 520,039 - BT0432 0.87 -0.6 520,060 + BT0432 0.90 +0.7 520,081 + -1.8 520,172 + -1.2 520,246 + tRNA-Thr BT_t02 0.40 -0.4 520,329 - -0.1
Or see this region's nucleotide sequence