Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0387 and BT0388 are separated by 24 nucleotides BT0388 and BT0389 are separated by 4 nucleotides BT0389 and BT0390 are separated by 4 nucleotides
BT0387: BT0387 - NADH dehydrogenase subunit 2 (NCBI ptt file), at 476,462 to 477,778
BT0387
BT0388: BT0388 - galactoside O-acetyltransferase (NCBI ptt file), at 477,803 to 478,426
BT0388
BT0389: BT0389 - putative galactoside acetyltransferase (NCBI ptt file), at 478,431 to 478,976
BT0389
BT0390: BT0390 - putative O-antigen export protein (NCBI ptt file), at 478,981 to 480,345
BT0390
Position (kb) 478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 477.444 kb on + strand, within BT0387 at 477.504 kb on + strand, within BT0387 at 477.610 kb on - strand, within BT0387 at 477.610 kb on - strand, within BT0387 at 477.650 kb on - strand at 477.712 kb on + strand at 477.712 kb on + strand at 477.736 kb on - strand at 477.777 kb on - strand at 477.849 kb on - strand at 477.865 kb on - strand at 477.955 kb on + strand, within BT0388 at 478.022 kb on - strand, within BT0388 at 478.078 kb on + strand, within BT0388 at 478.123 kb on - strand, within BT0388 at 478.135 kb on + strand, within BT0388 at 478.136 kb on - strand, within BT0388 at 478.280 kb on - strand, within BT0388 at 478.352 kb on - strand, within BT0388 at 478.354 kb on - strand, within BT0388 at 478.378 kb on + strand at 478.393 kb on - strand at 478.435 kb on + strand at 478.593 kb on - strand, within BT0389 at 478.672 kb on + strand, within BT0389 at 478.673 kb on - strand, within BT0389 at 478.730 kb on + strand, within BT0389 at 478.920 kb on - strand, within BT0389 at 479.103 kb on + strand at 479.103 kb on + strand at 479.196 kb on + strand, within BT0390 at 479.305 kb on - strand, within BT0390 at 479.378 kb on + strand, within BT0390 at 479.489 kb on + strand, within BT0390 at 479.490 kb on - strand, within BT0390 at 479.556 kb on + strand, within BT0390 at 479.591 kb on - strand, within BT0390 at 479.591 kb on - strand, within BT0390 at 479.602 kb on - strand, within BT0390 at 479.649 kb on - strand, within BT0390 at 479.671 kb on - strand, within BT0390 at 479.753 kb on + strand, within BT0390 at 479.815 kb on - strand, within BT0390 at 479.889 kb on - strand, within BT0390
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6 remove 477,444 + BT0387 0.75 -0.1 477,504 + BT0387 0.79 -0.6 477,610 - BT0387 0.87 -0.4 477,610 - BT0387 0.87 +1.2 477,650 - +1.0 477,712 + -0.5 477,712 + -0.4 477,736 - +0.6 477,777 - -1.7 477,849 - -3.1 477,865 - -1.0 477,955 + BT0388 0.24 -1.5 478,022 - BT0388 0.35 -0.3 478,078 + BT0388 0.44 -1.6 478,123 - BT0388 0.51 -0.1 478,135 + BT0388 0.53 -2.0 478,136 - BT0388 0.53 -0.5 478,280 - BT0388 0.76 -0.6 478,352 - BT0388 0.88 -2.0 478,354 - BT0388 0.88 -1.1 478,378 + +0.3 478,393 - -1.1 478,435 + -0.9 478,593 - BT0389 0.30 -0.5 478,672 + BT0389 0.44 -1.1 478,673 - BT0389 0.44 +0.5 478,730 + BT0389 0.55 +0.3 478,920 - BT0389 0.90 +1.4 479,103 + -1.5 479,103 + -0.4 479,196 + BT0390 0.16 +0.4 479,305 - BT0390 0.24 -0.6 479,378 + BT0390 0.29 -0.1 479,489 + BT0390 0.37 -0.8 479,490 - BT0390 0.37 -0.2 479,556 + BT0390 0.42 -1.2 479,591 - BT0390 0.45 +1.1 479,591 - BT0390 0.45 +0.8 479,602 - BT0390 0.45 -1.6 479,649 - BT0390 0.49 +0.6 479,671 - BT0390 0.51 -0.2 479,753 + BT0390 0.57 -1.9 479,815 - BT0390 0.61 +0.4 479,889 - BT0390 0.67 -0.4
Or see this region's nucleotide sequence