Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0237 and BT0238 are separated by 103 nucleotides BT0238 and BT0239 are separated by 157 nucleotides BT0239 and BT0240 are separated by 43 nucleotides
BT0237: BT0237 - conserved hypothetical protein (NCBI ptt file), at 259,935 to 262,022
BT0237
BT0238: BT0238 - transcriptional regulator (NCBI ptt file), at 262,126 to 263,370
BT0238
BT0239: BT0239 - hypothetical protein (NCBI ptt file), at 263,528 to 264,262
BT0239
BT0240: BT0240 - conserved hypothetical protein (NCBI ptt file), at 264,306 to 266,060
BT0240
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.228 kb on + strand, within BT0237 at 261.392 kb on - strand, within BT0237 at 261.396 kb on - strand, within BT0237 at 261.492 kb on - strand, within BT0237 at 261.518 kb on - strand, within BT0237 at 261.526 kb on + strand, within BT0237 at 261.527 kb on - strand, within BT0237 at 261.579 kb on - strand, within BT0237 at 261.602 kb on - strand, within BT0237 at 261.696 kb on + strand, within BT0237 at 261.699 kb on - strand, within BT0237 at 261.708 kb on - strand, within BT0237 at 261.798 kb on + strand, within BT0237 at 261.881 kb on + strand at 261.882 kb on - strand at 261.980 kb on + strand at 261.981 kb on - strand at 261.985 kb on - strand at 262.047 kb on + strand at 262.095 kb on + strand at 262.130 kb on + strand at 262.195 kb on + strand at 262.218 kb on + strand at 262.247 kb on + strand at 262.410 kb on + strand, within BT0238 at 262.410 kb on + strand, within BT0238 at 262.444 kb on - strand, within BT0238 at 262.444 kb on - strand, within BT0238 at 262.455 kb on + strand, within BT0238 at 262.487 kb on + strand, within BT0238 at 262.489 kb on + strand, within BT0238 at 262.489 kb on + strand, within BT0238 at 262.542 kb on + strand, within BT0238 at 262.543 kb on - strand, within BT0238 at 262.598 kb on - strand, within BT0238 at 262.704 kb on + strand, within BT0238 at 262.782 kb on - strand, within BT0238 at 262.857 kb on + strand, within BT0238 at 262.870 kb on + strand, within BT0238 at 263.191 kb on - strand, within BT0238 at 263.231 kb on - strand, within BT0238 at 263.231 kb on - strand, within BT0238 at 263.254 kb on + strand at 263.276 kb on + strand at 263.354 kb on + strand at 263.354 kb on + strand at 263.391 kb on + strand at 263.435 kb on - strand at 263.539 kb on + strand at 263.590 kb on + strand at 263.590 kb on + strand at 263.590 kb on + strand at 263.590 kb on + strand at 263.590 kb on + strand at 263.590 kb on + strand at 263.591 kb on - strand at 263.591 kb on - strand at 263.591 kb on - strand at 263.594 kb on + strand at 263.596 kb on + strand at 263.601 kb on + strand at 263.601 kb on + strand at 263.602 kb on - strand, within BT0239 at 263.602 kb on - strand, within BT0239 at 263.620 kb on - strand, within BT0239 at 263.645 kb on + strand, within BT0239 at 263.812 kb on + strand, within BT0239 at 263.818 kb on + strand, within BT0239 at 263.875 kb on + strand, within BT0239 at 264.021 kb on - strand, within BT0239 at 264.067 kb on + strand, within BT0239 at 264.072 kb on + strand, within BT0239 at 264.073 kb on - strand, within BT0239 at 264.076 kb on + strand, within BT0239 at 264.076 kb on + strand, within BT0239 at 264.078 kb on + strand, within BT0239 at 264.102 kb on - strand, within BT0239 at 264.106 kb on + strand, within BT0239 at 264.109 kb on + strand, within BT0239 at 264.123 kb on + strand, within BT0239 at 264.124 kb on - strand, within BT0239 at 264.163 kb on + strand, within BT0239 at 264.167 kb on - strand, within BT0239
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6 remove 261,228 + BT0237 0.62 +0.2 261,392 - BT0237 0.70 -0.2 261,396 - BT0237 0.70 +0.9 261,492 - BT0237 0.75 -0.3 261,518 - BT0237 0.76 -0.7 261,526 + BT0237 0.76 +0.3 261,527 - BT0237 0.76 -0.5 261,579 - BT0237 0.79 -0.8 261,602 - BT0237 0.80 +0.4 261,696 + BT0237 0.84 -0.5 261,699 - BT0237 0.84 -0.9 261,708 - BT0237 0.85 +0.0 261,798 + BT0237 0.89 -1.6 261,881 + -0.1 261,882 - -0.5 261,980 + -1.4 261,981 - -1.5 261,985 - -0.9 262,047 + -0.5 262,095 + +0.0 262,130 + -0.2 262,195 + -0.2 262,218 + -1.8 262,247 + -0.7 262,410 + BT0238 0.23 +0.3 262,410 + BT0238 0.23 -0.3 262,444 - BT0238 0.26 +1.4 262,444 - BT0238 0.26 -0.7 262,455 + BT0238 0.26 +1.3 262,487 + BT0238 0.29 -1.2 262,489 + BT0238 0.29 +0.6 262,489 + BT0238 0.29 +1.6 262,542 + BT0238 0.33 -0.7 262,543 - BT0238 0.33 -0.4 262,598 - BT0238 0.38 -0.2 262,704 + BT0238 0.46 +0.0 262,782 - BT0238 0.53 +0.2 262,857 + BT0238 0.59 +0.5 262,870 + BT0238 0.60 +0.2 263,191 - BT0238 0.86 -0.2 263,231 - BT0238 0.89 +0.8 263,231 - BT0238 0.89 +0.1 263,254 + -0.3 263,276 + -1.4 263,354 + -1.5 263,354 + +0.9 263,391 + -1.1 263,435 - -2.1 263,539 + -2.4 263,590 + +0.1 263,590 + +1.9 263,590 + +0.6 263,590 + -2.0 263,590 + +0.3 263,590 + -0.2 263,591 - -1.7 263,591 - -0.7 263,591 - +0.3 263,594 + +0.4 263,596 + -0.3 263,601 + -2.5 263,601 + -1.8 263,602 - BT0239 0.10 +2.7 263,602 - BT0239 0.10 +0.8 263,620 - BT0239 0.13 -1.7 263,645 + BT0239 0.16 -1.2 263,812 + BT0239 0.39 -0.5 263,818 + BT0239 0.39 -1.6 263,875 + BT0239 0.47 -0.7 264,021 - BT0239 0.67 -1.5 264,067 + BT0239 0.73 -0.2 264,072 + BT0239 0.74 -1.2 264,073 - BT0239 0.74 +0.3 264,076 + BT0239 0.75 -0.5 264,076 + BT0239 0.75 +0.0 264,078 + BT0239 0.75 -0.5 264,102 - BT0239 0.78 -0.1 264,106 + BT0239 0.79 -1.5 264,109 + BT0239 0.79 -0.8 264,123 + BT0239 0.81 -0.9 264,124 - BT0239 0.81 -2.5 264,163 + BT0239 0.86 -1.1 264,167 - BT0239 0.87 -0.4
Or see this region's nucleotide sequence