Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0200 and BT0201 are separated by 9 nucleotides BT0201 and BT0202 overlap by 4 nucleotides
BT0200: BT0200 - ATP phosphoribosyltransferase (NCBI ptt file), at 215,094 to 215,945
BT0200
BT0201: BT0201 - histidinol dehydrogenase (NCBI ptt file), at 215,955 to 217,241
BT0201
BT0202: BT0202 - histidinol-phosphate aminotransferase (EC 2.6.1.9) <small>(from data)</small>, at 217,238 to 218,278
BT0202
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 214.988 kb on + strand at 214.998 kb on - strand at 215.004 kb on - strand at 215.190 kb on - strand, within BT0200 at 215.230 kb on + strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.577 kb on - strand, within BT0200 at 215.612 kb on - strand, within BT0200 at 215.674 kb on + strand, within BT0200 at 215.756 kb on + strand, within BT0200 at 215.771 kb on - strand, within BT0200 at 215.802 kb on - strand, within BT0200 at 215.805 kb on - strand, within BT0200 at 215.910 kb on - strand at 215.943 kb on + strand at 216.058 kb on + strand at 216.059 kb on - strand at 216.158 kb on - strand, within BT0201 at 216.204 kb on - strand, within BT0201 at 216.309 kb on - strand, within BT0201 at 216.330 kb on - strand, within BT0201 at 216.455 kb on + strand, within BT0201 at 216.455 kb on - strand, within BT0201 at 216.494 kb on - strand, within BT0201 at 216.494 kb on - strand, within BT0201 at 216.494 kb on - strand, within BT0201 at 216.534 kb on + strand, within BT0201 at 216.535 kb on - strand, within BT0201 at 216.629 kb on - strand, within BT0201 at 216.713 kb on - strand, within BT0201 at 216.787 kb on + strand, within BT0201 at 216.799 kb on + strand, within BT0201 at 216.800 kb on - strand, within BT0201 at 217.046 kb on + strand, within BT0201 at 217.047 kb on - strand, within BT0201 at 217.047 kb on - strand, within BT0201 at 217.230 kb on - strand at 217.271 kb on - strand at 217.282 kb on - strand at 217.311 kb on - strand at 217.313 kb on - strand at 217.361 kb on - strand, within BT0202 at 217.447 kb on + strand, within BT0202 at 217.448 kb on - strand, within BT0202 at 217.524 kb on + strand, within BT0202 at 217.524 kb on + strand, within BT0202 at 217.524 kb on + strand, within BT0202 at 217.525 kb on - strand, within BT0202 at 217.545 kb on - strand, within BT0202 at 217.554 kb on - strand, within BT0202 at 217.658 kb on - strand, within BT0202 at 217.731 kb on + strand, within BT0202 at 217.773 kb on - strand, within BT0202 at 217.775 kb on - strand, within BT0202 at 217.941 kb on - strand, within BT0202 at 217.941 kb on - strand, within BT0202 at 217.941 kb on - strand, within BT0202 at 217.992 kb on - strand, within BT0202 at 217.995 kb on - strand, within BT0202 at 218.084 kb on + strand, within BT0202 at 218.085 kb on - strand, within BT0202
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6 remove 214,988 + +0.9 214,998 - -3.5 215,004 - -2.0 215,190 - BT0200 0.11 -3.8 215,230 + BT0200 0.16 -2.3 215,495 - BT0200 0.47 -3.1 215,495 - BT0200 0.47 -0.3 215,495 - BT0200 0.47 -2.0 215,577 - BT0200 0.57 -2.3 215,612 - BT0200 0.61 -1.3 215,674 + BT0200 0.68 -4.1 215,756 + BT0200 0.78 -1.9 215,771 - BT0200 0.79 -2.3 215,802 - BT0200 0.83 -4.2 215,805 - BT0200 0.83 -1.5 215,910 - -2.1 215,943 + -0.7 216,058 + -1.5 216,059 - -0.7 216,158 - BT0201 0.16 -2.5 216,204 - BT0201 0.19 -2.7 216,309 - BT0201 0.28 -2.5 216,330 - BT0201 0.29 -4.2 216,455 + BT0201 0.39 -4.8 216,455 - BT0201 0.39 -2.1 216,494 - BT0201 0.42 -3.9 216,494 - BT0201 0.42 -2.8 216,494 - BT0201 0.42 -1.5 216,534 + BT0201 0.45 -2.6 216,535 - BT0201 0.45 +0.3 216,629 - BT0201 0.52 -2.3 216,713 - BT0201 0.59 -0.7 216,787 + BT0201 0.65 -3.3 216,799 + BT0201 0.66 -2.0 216,800 - BT0201 0.66 -3.6 217,046 + BT0201 0.85 -1.0 217,047 - BT0201 0.85 -1.8 217,047 - BT0201 0.85 -2.7 217,230 - -1.3 217,271 - -4.4 217,282 - -3.9 217,311 - -4.3 217,313 - -1.0 217,361 - BT0202 0.12 -2.3 217,447 + BT0202 0.20 -2.3 217,448 - BT0202 0.20 -1.0 217,524 + BT0202 0.27 -2.4 217,524 + BT0202 0.27 -0.7 217,524 + BT0202 0.27 -4.2 217,525 - BT0202 0.28 -3.1 217,545 - BT0202 0.29 -0.3 217,554 - BT0202 0.30 -5.6 217,658 - BT0202 0.40 -3.7 217,731 + BT0202 0.47 -2.4 217,773 - BT0202 0.51 -1.7 217,775 - BT0202 0.52 -3.0 217,941 - BT0202 0.68 -3.3 217,941 - BT0202 0.68 -4.7 217,941 - BT0202 0.68 -4.2 217,992 - BT0202 0.72 -4.6 217,995 - BT0202 0.73 -1.3 218,084 + BT0202 0.81 -4.0 218,085 - BT0202 0.81 -3.8
Or see this region's nucleotide sequence