Experiment: Survival in PBS at 22C, experiment2, 6 day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0493.1 and SO0494 are separated by 657 nucleotides SO0494 and SO0495 are separated by 59 nucleotides
SO0493.1: SO0493.1 - hypothetical protein (NCBI ptt file), at 517,895 to 518,122
SO0493.1
SO0494: SO0494 - ISSod1, transposase OrfA (NCBI ptt file), at 518,780 to 519,070
SO0494
SO0495: SO0495 - ISSod1, transposase OrfB (NCBI ptt file), at 519,130 to 519,939
SO0495
Position (kb) 518
519
520 Strain fitness (log2 ratio) -2
-1
0
1
2 at 517.802 kb on + strand at 517.830 kb on - strand at 517.842 kb on + strand at 517.843 kb on - strand at 517.850 kb on + strand at 517.869 kb on - strand at 517.947 kb on + strand, within SO0493.1 at 517.947 kb on + strand, within SO0493.1 at 517.948 kb on + strand, within SO0493.1 at 517.955 kb on - strand, within SO0493.1 at 517.957 kb on + strand, within SO0493.1 at 517.957 kb on + strand, within SO0493.1 at 517.969 kb on - strand, within SO0493.1 at 517.990 kb on + strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 518.006 kb on - strand, within SO0493.1 at 518.007 kb on + strand, within SO0493.1 at 518.007 kb on + strand, within SO0493.1 at 518.008 kb on + strand, within SO0493.1 at 518.024 kb on - strand, within SO0493.1 at 518.025 kb on + strand, within SO0493.1 at 518.025 kb on + strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.042 kb on - strand, within SO0493.1 at 518.042 kb on - strand, within SO0493.1 at 518.049 kb on + strand, within SO0493.1 at 518.049 kb on + strand, within SO0493.1 at 518.052 kb on - strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.081 kb on + strand, within SO0493.1 at 518.081 kb on + strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.089 kb on - strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.104 kb on - strand at 518.104 kb on - strand at 518.105 kb on - strand at 518.105 kb on - strand at 518.112 kb on - strand at 518.120 kb on + strand at 518.138 kb on - strand at 518.146 kb on - strand at 518.159 kb on + strand at 518.159 kb on + strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.172 kb on - strand at 518.198 kb on + strand at 518.208 kb on - strand at 518.216 kb on - strand at 518.269 kb on - strand at 518.296 kb on + strand at 518.300 kb on - strand at 518.304 kb on - strand at 518.326 kb on + strand at 518.336 kb on + strand at 518.339 kb on - strand at 518.344 kb on - strand at 518.344 kb on - strand at 518.357 kb on + strand at 518.362 kb on + strand at 518.362 kb on + strand at 518.365 kb on + strand at 518.365 kb on - strand at 518.370 kb on - strand at 518.370 kb on - strand at 518.370 kb on - strand at 518.373 kb on - strand at 518.374 kb on + strand at 518.374 kb on + strand at 518.375 kb on - strand at 518.375 kb on - strand at 518.382 kb on - strand at 518.382 kb on - strand at 518.382 kb on - strand at 518.388 kb on + strand at 518.397 kb on - strand at 518.399 kb on + strand at 518.400 kb on + strand at 518.407 kb on + strand at 518.407 kb on - strand at 518.407 kb on - strand at 518.415 kb on - strand at 518.416 kb on - strand at 518.431 kb on - strand at 518.435 kb on + strand at 518.471 kb on - strand at 518.502 kb on - strand at 518.507 kb on - strand at 518.525 kb on - strand at 518.525 kb on - strand at 518.527 kb on + strand at 518.535 kb on - strand at 518.550 kb on + strand at 518.566 kb on + strand at 518.567 kb on + strand at 518.595 kb on + strand at 518.613 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.649 kb on - strand at 518.651 kb on + strand at 518.651 kb on + strand at 518.652 kb on - strand at 518.652 kb on - strand at 518.659 kb on - strand at 518.662 kb on + strand at 518.664 kb on + strand at 518.670 kb on - strand at 518.672 kb on - strand at 518.690 kb on + strand at 518.698 kb on + strand at 518.706 kb on - strand at 518.706 kb on - strand at 518.706 kb on - strand at 518.712 kb on - strand at 518.714 kb on - strand at 518.717 kb on - strand at 518.717 kb on - strand at 518.717 kb on - strand at 518.717 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.722 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.727 kb on - strand at 518.728 kb on - strand at 518.728 kb on - strand at 518.728 kb on - strand at 519.928 kb on + strand at 519.933 kb on + strand at 519.933 kb on + strand at 519.933 kb on + strand at 519.933 kb on + strand at 519.938 kb on + strand at 519.943 kb on + strand at 519.952 kb on + strand at 519.960 kb on - strand at 519.963 kb on + strand at 519.963 kb on + strand at 519.963 kb on + strand at 519.963 kb on + strand at 519.970 kb on - strand at 519.970 kb on - strand at 519.971 kb on - strand at 519.971 kb on - strand at 519.971 kb on - strand at 519.971 kb on - strand at 519.971 kb on - strand at 519.978 kb on - strand at 519.994 kb on + strand at 520.030 kb on - strand at 520.035 kb on - strand at 520.041 kb on + strand at 520.041 kb on + strand at 520.049 kb on - strand at 520.049 kb on - strand at 520.049 kb on - strand at 520.049 kb on - strand at 520.051 kb on + strand at 520.057 kb on - strand at 520.059 kb on + strand at 520.059 kb on - strand at 520.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival in PBS at 22C, experiment2, 6 day remove 517,802 + +0.4 517,830 - -0.2 517,842 + +0.7 517,843 - -0.0 517,850 + -0.6 517,869 - -0.8 517,947 + SO0493.1 0.23 +0.8 517,947 + SO0493.1 0.23 +0.2 517,948 + SO0493.1 0.23 +0.8 517,955 - SO0493.1 0.26 +0.1 517,957 + SO0493.1 0.27 +0.3 517,957 + SO0493.1 0.27 -1.5 517,969 - SO0493.1 0.32 +0.1 517,990 + SO0493.1 0.42 -0.2 517,998 - SO0493.1 0.45 -0.1 517,998 - SO0493.1 0.45 +0.3 517,998 - SO0493.1 0.45 +0.5 517,998 - SO0493.1 0.45 -0.5 518,006 - SO0493.1 0.49 -0.5 518,007 + SO0493.1 0.49 +0.3 518,007 + SO0493.1 0.49 -0.6 518,008 + SO0493.1 0.50 +1.0 518,024 - SO0493.1 0.57 +0.7 518,025 + SO0493.1 0.57 +1.1 518,025 + SO0493.1 0.57 -0.2 518,033 - SO0493.1 0.61 +0.9 518,033 - SO0493.1 0.61 -1.3 518,033 - SO0493.1 0.61 +0.7 518,042 - SO0493.1 0.64 -0.9 518,042 - SO0493.1 0.64 +1.4 518,049 + SO0493.1 0.68 +1.1 518,049 + SO0493.1 0.68 -0.1 518,052 - SO0493.1 0.69 +0.3 518,076 + SO0493.1 0.79 +0.3 518,076 + SO0493.1 0.79 +0.1 518,076 + SO0493.1 0.79 -1.9 518,076 + SO0493.1 0.79 -0.2 518,076 + SO0493.1 0.79 -0.3 518,076 + SO0493.1 0.79 +0.3 518,081 + SO0493.1 0.82 +1.7 518,081 + SO0493.1 0.82 +0.1 518,084 - SO0493.1 0.83 +0.7 518,084 - SO0493.1 0.83 -2.0 518,084 - SO0493.1 0.83 +0.2 518,084 - SO0493.1 0.83 +0.2 518,084 - SO0493.1 0.83 +0.3 518,089 - SO0493.1 0.85 -0.3 518,091 + SO0493.1 0.86 +0.8 518,091 + SO0493.1 0.86 +0.4 518,091 + SO0493.1 0.86 -0.1 518,091 + SO0493.1 0.86 -0.2 518,091 + SO0493.1 0.86 -0.5 518,091 + SO0493.1 0.86 +1.8 518,091 + SO0493.1 0.86 -0.6 518,091 + SO0493.1 0.86 +0.2 518,091 + SO0493.1 0.86 +0.3 518,091 + SO0493.1 0.86 +0.8 518,091 + SO0493.1 0.86 -1.0 518,091 + SO0493.1 0.86 -0.5 518,091 + SO0493.1 0.86 -1.6 518,091 + SO0493.1 0.86 -0.7 518,091 + SO0493.1 0.86 +0.4 518,091 + SO0493.1 0.86 +0.2 518,091 + SO0493.1 0.86 +0.1 518,099 - SO0493.1 0.89 -0.4 518,099 - SO0493.1 0.89 +0.9 518,099 - SO0493.1 0.89 +0.4 518,099 - SO0493.1 0.89 -0.2 518,099 - SO0493.1 0.89 +0.3 518,099 - SO0493.1 0.89 +0.4 518,099 - SO0493.1 0.89 -0.7 518,099 - SO0493.1 0.89 +0.1 518,099 - SO0493.1 0.89 +0.9 518,099 - SO0493.1 0.89 -0.5 518,104 - -0.1 518,104 - -0.8 518,105 - -2.2 518,105 - +0.6 518,112 - -0.6 518,120 + -2.6 518,138 - -0.3 518,146 - -0.3 518,159 + -0.1 518,159 + -0.8 518,167 - -1.1 518,167 - -0.5 518,167 - +0.1 518,167 - +0.4 518,172 - +0.4 518,198 + +1.4 518,208 - -1.9 518,216 - +0.2 518,269 - +1.7 518,296 + +0.2 518,300 - +0.4 518,304 - -0.0 518,326 + -0.4 518,336 + +0.3 518,339 - -0.1 518,344 - -1.3 518,344 - -0.2 518,357 + +1.1 518,362 + +0.1 518,362 + +0.9 518,365 + +0.5 518,365 - -1.2 518,370 - -0.6 518,370 - +2.2 518,370 - -0.9 518,373 - +0.2 518,374 + +0.3 518,374 + -0.3 518,375 - -0.3 518,375 - -0.2 518,382 - +0.1 518,382 - +0.3 518,382 - +0.0 518,388 + -0.6 518,397 - -0.2 518,399 + -0.0 518,400 + +0.2 518,407 + -0.5 518,407 - -0.4 518,407 - +0.4 518,415 - -0.0 518,416 - +0.1 518,431 - -0.3 518,435 + +0.4 518,471 - -2.2 518,502 - -0.1 518,507 - -0.0 518,525 - +1.8 518,525 - -1.1 518,527 + +0.6 518,535 - -0.8 518,550 + -0.3 518,566 + -0.6 518,567 + -0.4 518,595 + +0.2 518,613 - +0.3 518,649 - +0.2 518,649 - -0.2 518,649 - -0.4 518,649 - -0.3 518,649 - +0.4 518,649 - -0.2 518,651 + -1.0 518,651 + +0.8 518,652 - -0.5 518,652 - +0.8 518,659 - +0.5 518,662 + +2.1 518,664 + +1.1 518,670 - +0.3 518,672 - -0.6 518,690 + +0.3 518,698 + -1.3 518,706 - +0.7 518,706 - -0.3 518,706 - -0.5 518,712 - +0.3 518,714 - +1.1 518,717 - -1.9 518,717 - +1.5 518,717 - -0.5 518,717 - -0.3 518,722 - -0.2 518,722 - +0.6 518,722 - -0.3 518,722 - +0.5 518,722 - -0.5 518,722 - -0.9 518,722 - -0.6 518,722 - +0.8 518,722 - -0.2 518,722 - +0.0 518,722 - +1.9 518,722 - -0.0 518,722 - -0.0 518,722 - -0.3 518,727 - +0.4 518,727 - -0.4 518,727 - +0.1 518,727 - +0.0 518,727 - -0.6 518,727 - -0.2 518,727 - +0.3 518,727 - +0.7 518,727 - -0.7 518,727 - +0.3 518,727 - +0.2 518,727 - +0.3 518,727 - +0.6 518,727 - -1.7 518,727 - -1.4 518,727 - -0.3 518,727 - +0.5 518,727 - +0.2 518,727 - -0.9 518,727 - -1.1 518,727 - +0.7 518,727 - +1.3 518,727 - +1.3 518,727 - -0.7 518,727 - +0.2 518,727 - -0.2 518,727 - -0.6 518,727 - +0.2 518,727 - +0.1 518,727 - -0.1 518,727 - +1.1 518,727 - +1.1 518,727 - +0.8 518,727 - -1.2 518,727 - +0.1 518,727 - +0.4 518,727 - -0.3 518,727 - -0.1 518,727 - -1.3 518,727 - +0.8 518,727 - -0.0 518,727 - +0.2 518,727 - +0.2 518,727 - -0.0 518,727 - +1.4 518,727 - -0.0 518,727 - -0.2 518,727 - +0.6 518,727 - -0.5 518,727 - -0.1 518,727 - +0.6 518,727 - +1.3 518,727 - -0.0 518,727 - +1.4 518,727 - +2.1 518,727 - -0.6 518,727 - -0.1 518,727 - +1.0 518,727 - +0.2 518,727 - +0.3 518,727 - +0.1 518,727 - +0.1 518,727 - +0.7 518,727 - -0.4 518,727 - +1.1 518,727 - +1.7 518,727 - -0.2 518,727 - +0.6 518,727 - -0.4 518,727 - +1.2 518,727 - -1.9 518,727 - +0.9 518,727 - -0.6 518,727 - -0.2 518,727 - -0.3 518,727 - -0.3 518,727 - -1.9 518,727 - +0.2 518,727 - -0.2 518,727 - +1.1 518,727 - -0.8 518,727 - +0.8 518,727 - +0.4 518,727 - -0.4 518,727 - -1.0 518,727 - +0.4 518,727 - +0.4 518,727 - -0.5 518,727 - -1.5 518,727 - -0.5 518,727 - +0.6 518,727 - +0.8 518,727 - -1.3 518,727 - +1.1 518,727 - +0.1 518,727 - -0.8 518,727 - -1.2 518,727 - -0.7 518,727 - -0.8 518,727 - -0.5 518,727 - -1.4 518,727 - +0.3 518,727 - -1.2 518,727 - +0.6 518,727 - +0.8 518,728 - -0.4 518,728 - +0.4 518,728 - -0.6 519,928 + +0.3 519,933 + -0.2 519,933 + -0.1 519,933 + -0.1 519,933 + -0.2 519,938 + +0.7 519,943 + -2.1 519,952 + +1.4 519,960 - -2.0 519,963 + +0.5 519,963 + +0.5 519,963 + +0.4 519,963 + -0.7 519,970 - -0.2 519,970 - -1.5 519,971 - -0.4 519,971 - +2.3 519,971 - +0.4 519,971 - +0.5 519,971 - +0.9 519,978 - +0.1 519,994 + -0.6 520,030 - -1.5 520,035 - +0.2 520,041 + +0.8 520,041 + +0.7 520,049 - -0.7 520,049 - +0.2 520,049 - -0.7 520,049 - +0.2 520,051 + +0.6 520,057 - -1.0 520,059 + +0.3 520,059 - -0.1 520,059 - -1.7
Or see this region's nucleotide sequence