Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3599

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
4,659,756	+		BT3598	0.41	+0.0
4,659,757	-		BT3598	0.41	-2.2
4,659,816	+		BT3598	0.45	-0.9
4,659,817	-		BT3598	0.45	+0.0
4,659,834	+		BT3598	0.46	-0.1
4,659,857	+		BT3598	0.47	+0.3
4,660,022	-		BT3598	0.57	+1.8
4,660,026	+		BT3598	0.58	-0.9
4,660,027	-		BT3598	0.58	+0.0
4,660,031	+		BT3598	0.58	-0.4
4,660,052	+		BT3598	0.59	+1.2
4,660,053	-		BT3598	0.59	-0.1
4,660,186	+		BT3598	0.68	+1.9
4,660,187	-		BT3598	0.68	+1.2
4,660,187	-		BT3598	0.68	+0.7
4,660,190	-		BT3598	0.68	-0.8
4,660,256	+		BT3598	0.72	+0.7
4,660,343	+		BT3598	0.77	+0.2
4,660,349	-		BT3598	0.78	-1.0
4,660,381	-		BT3598	0.80	-0.6
4,660,433	+		BT3598	0.83	-1.7
4,660,434	-		BT3598	0.83	-0.2
4,660,483	-		BT3598	0.86	-0.4
4,660,500	+		BT3598	0.87	-1.8
4,660,538	+		BT3598	0.89	-0.5
4,660,540	+		BT3598	0.89	+0.7
4,660,628	+				-0.8
4,660,671	+				+0.3
4,660,675	+				-0.4
4,660,696	-				-1.6
4,660,698	+				-1.4
4,660,699	-				-0.7
4,660,725	+				-0.3
4,660,848	+				+0.4
4,660,875	+				-0.2
4,660,881	+				-0.3
4,660,995	-				+0.3
4,661,038	+		BT3599	0.11	-1.0
4,661,040	+		BT3599	0.11	-0.4
4,661,040	+		BT3599	0.11	-0.3
4,661,040	+		BT3599	0.11	-1.0
4,661,040	+		BT3599	0.11	-0.8
4,661,091	-		BT3599	0.13	+0.6
4,661,093	-		BT3599	0.13	-0.3
4,661,095	+		BT3599	0.13	-0.5
4,661,143	+		BT3599	0.15	-1.0
4,661,168	+		BT3599	0.16	-0.8
4,661,168	+		BT3599	0.16	-0.4
4,661,168	+		BT3599	0.16	-2.9
4,661,168	+		BT3599	0.16	-1.9
4,661,177	-		BT3599	0.16	-0.6
4,661,206	-		BT3599	0.17	-0.2
4,661,249	+		BT3599	0.19	-0.3
4,661,276	+		BT3599	0.20	-0.5
4,661,329	+		BT3599	0.22	-0.4
4,661,329	+		BT3599	0.22	-0.6
4,661,350	+		BT3599	0.23	-0.6
4,661,395	-		BT3599	0.24	+0.4
4,661,528	-		BT3599	0.29	+3.1
4,661,528	-		BT3599	0.29	-0.4
4,661,551	+		BT3599	0.30	+0.5
4,661,603	+		BT3599	0.32	-0.5
4,661,604	-		BT3599	0.32	-1.0
4,661,604	-		BT3599	0.32	-0.6
4,661,645	+		BT3599	0.33	+0.6
4,661,646	-		BT3599	0.33	-0.6
4,661,654	+		BT3599	0.34	+0.9
4,661,658	+		BT3599	0.34	-0.6
4,661,680	+		BT3599	0.34	-0.7
4,661,688	+		BT3599	0.35	-0.0
4,661,689	-		BT3599	0.35	-0.5
4,661,739	+		BT3599	0.37	-0.9
4,661,739	+		BT3599	0.37	-0.5
4,661,752	+		BT3599	0.37	-0.2
4,661,755	+		BT3599	0.37	-0.3
4,661,812	-		BT3599	0.39	+0.2
4,661,812	-		BT3599	0.39	-2.3
4,661,858	+		BT3599	0.41	-0.3
4,661,924	-		BT3599	0.43	+0.3
4,661,924	-		BT3599	0.43	-1.3
4,661,952	-		BT3599	0.44	+0.4
4,661,972	+		BT3599	0.45	-1.6
4,661,973	-		BT3599	0.45	-0.4
4,661,990	-		BT3599	0.46	-0.2
4,662,024	+		BT3599	0.47	-1.6
4,662,024	+		BT3599	0.47	-0.6
4,662,025	-		BT3599	0.47	-0.7
4,662,025	-		BT3599	0.47	+1.0
4,662,044	+		BT3599	0.48	-0.2
4,662,091	-		BT3599	0.49	-0.8
4,662,091	-		BT3599	0.49	-0.8
4,662,112	+		BT3599	0.50	-0.2
4,662,117	-		BT3599	0.50	+0.4
4,662,125	+		BT3599	0.51	+0.3
4,662,129	+		BT3599	0.51	+0.3
4,662,176	+		BT3599	0.52	-1.6
4,662,211	+		BT3599	0.54	-0.4
4,662,241	-		BT3599	0.55	-0.4
4,662,252	+		BT3599	0.55	-1.3
4,662,252	+		BT3599	0.55	+0.8
4,662,253	-		BT3599	0.55	-0.1
4,662,253	-		BT3599	0.55	-0.2
4,662,340	-		BT3599	0.58	+1.3
4,662,389	+		BT3599	0.60	+0.9
4,662,390	-		BT3599	0.60	+0.6
4,662,405	+		BT3599	0.61	-1.3
4,662,422	+		BT3599	0.61	-1.4
4,662,422	+		BT3599	0.61	+1.0
4,662,425	-		BT3599	0.61	+0.3
4,662,453	+		BT3599	0.62	+0.2
4,662,454	-		BT3599	0.62	+0.0
4,662,458	-		BT3599	0.63	-1.0
4,662,475	-		BT3599	0.63	+0.0
4,662,475	-		BT3599	0.63	-0.8
4,662,501	+		BT3599	0.64	+0.2
4,662,504	+		BT3599	0.64	-0.4
4,662,505	-		BT3599	0.64	-0.7
4,662,600	+		BT3599	0.68	-0.3
4,662,600	+		BT3599	0.68	-0.9
4,662,636	-		BT3599	0.69	-1.4
4,662,643	-		BT3599	0.69	-1.3
4,662,666	+		BT3599	0.70	-0.7
4,662,683	+		BT3599	0.71	+0.8
4,662,683	+		BT3599	0.71	-1.2
4,662,719	+		BT3599	0.72	-0.5
4,662,719	+		BT3599	0.72	+0.4
4,662,726	-		BT3599	0.72	-2.2
4,662,728	+		BT3599	0.72	-0.3
4,662,728	+		BT3599	0.72	-0.7
4,662,728	+		BT3599	0.72	-0.6
4,662,729	-		BT3599	0.72	+1.4
4,662,730	+		BT3599	0.72	-0.5
4,662,731	-		BT3599	0.72	-2.0
4,662,785	+		BT3599	0.74	-0.4
4,662,786	-		BT3599	0.74	+0.4
4,662,840	+		BT3599	0.76	-0.9
4,662,895	-		BT3599	0.78	-0.7
4,662,896	+		BT3599	0.78	-1.0
4,662,896	+		BT3599	0.78	+1.0
4,662,897	-		BT3599	0.79	-0.1
4,662,897	-		BT3599	0.79	-0.2
4,662,897	-		BT3599	0.79	-2.3
4,662,989	+		BT3599	0.82	+0.0
4,663,018	-		BT3599	0.83	+0.2
4,663,020	+		BT3599	0.83	-0.8
4,663,020	+		BT3599	0.83	-0.5
4,663,020	+		BT3599	0.83	+0.2
4,663,020	+		BT3599	0.83	-0.5
4,663,059	+		BT3599	0.84	-0.8
4,663,077	-		BT3599	0.85	+0.1
4,663,112	+		BT3599	0.86	+0.0
4,663,114	+		BT3599	0.86	+1.3
4,663,192	+		BT3599	0.89	-0.6
4,663,193	-		BT3599	0.89	-0.0
4,663,193	-		BT3599	0.89	+0.1
4,663,284	-				+0.7
4,663,294	-				-0.1
4,663,294	-				-0.3
4,663,317	+				-0.6
4,663,340	+				-0.3
4,663,358	+				-0.9
4,663,358	+				+0.2
4,663,359	-				+0.0
4,663,359	-				-2.3
4,663,431	-				+0.3
4,663,459	-				+0.9
4,663,468	+				-0.3
4,663,474	-				-1.3
4,663,475	+				-0.6
4,663,476	-				-1.9
4,663,541	+				-0.4
4,663,541	+				-1.2
4,663,563	+				+0.2
4,663,597	+		BT3600	0.11	-0.5
4,663,608	+		BT3600	0.12	-1.1
4,663,632	+		BT3600	0.15	-0.8
4,663,632	+		BT3600	0.15	+0.0
4,663,634	+		BT3600	0.15	-0.2
4,663,635	-		BT3600	0.15	+0.0
4,663,664	+		BT3600	0.19	-1.1
4,663,689	-		BT3600	0.21	-0.6
4,663,824	+		BT3600	0.36	-1.1
4,663,825	-		BT3600	0.37	-0.4
4,663,848	+		BT3600	0.39	-0.5
4,663,852	+		BT3600	0.40	+0.4
4,663,860	+		BT3600	0.40	-2.0
4,663,860	+		BT3600	0.40	-1.6
4,663,876	+		BT3600	0.42	-1.7
4,663,935	+		BT3600	0.49	-0.5
4,663,942	-		BT3600	0.50	-0.8
4,663,943	+		BT3600	0.50	-0.4
4,663,943	+		BT3600	0.50	-0.8
4,663,944	-		BT3600	0.50	-0.7
4,663,953	+		BT3600	0.51	-0.8
4,663,977	+		BT3600	0.54	-1.3
4,663,978	-		BT3600	0.54	+1.9
4,664,099	-		BT3600	0.67	+0.2
4,664,107	-		BT3600	0.68	+0.6
4,664,154	+		BT3600	0.73	+0.1
4,664,154	+		BT3600	0.73	+0.8
4,664,154	+		BT3600	0.73	-0.8
4,664,283	-		BT3600	0.88	-0.5
4,664,351	+				-0.8
4,664,412	+				-0.5
4,664,429	+				-1.5
4,664,429	+				+0.6
4,664,430	-				-1.4
4,664,468	+				-0.5