Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002109

Experiment: RCH2_defined_glucose_5mM with Abietic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Abietic Acid 5 mM
2,363,922	+		ABIE53_002108	0.72	-1.7
2,363,922	+		ABIE53_002108	0.72	+0.7
2,363,923	-		ABIE53_002108	0.72	-1.1
2,364,052	+		ABIE53_002108	0.76	-1.2
2,364,052	+		ABIE53_002108	0.76	-0.8
2,364,052	+		ABIE53_002108	0.76	-1.3
2,364,053	-		ABIE53_002108	0.76	+0.9
2,364,053	-		ABIE53_002108	0.76	-0.1
2,364,053	-		ABIE53_002108	0.76	-0.9
2,364,132	+		ABIE53_002108	0.78	-1.3
2,364,133	-		ABIE53_002108	0.78	-0.3
2,364,133	-		ABIE53_002108	0.78	-1.1
2,364,133	-		ABIE53_002108	0.78	+0.6
2,364,133	-		ABIE53_002108	0.78	-0.4
2,364,210	+		ABIE53_002108	0.80	-0.9
2,364,210	+		ABIE53_002108	0.80	-1.8
2,364,210	+		ABIE53_002108	0.80	+0.0
2,364,378	+		ABIE53_002108	0.85	-0.5
2,364,378	+		ABIE53_002108	0.85	-0.5
2,364,378	+		ABIE53_002108	0.85	-0.3
2,364,378	+		ABIE53_002108	0.85	-1.5
2,364,378	+		ABIE53_002108	0.85	+0.5
2,364,379	-		ABIE53_002108	0.85	-1.9
2,364,379	-		ABIE53_002108	0.85	-1.8
2,364,616	+				+0.9
2,364,616	+				+1.1
2,364,617	-				-1.5
2,364,776	+				-0.5
2,364,777	-				-0.8
2,364,821	+				-2.3
2,364,821	+				-0.3
2,364,822	-				-0.4
2,364,862	+				-0.5
2,364,862	+				+0.8
2,365,032	+		ABIE53_002109	0.11	-2.5
2,365,032	+		ABIE53_002109	0.11	-0.2
2,365,032	+		ABIE53_002109	0.11	-0.5
2,365,033	-		ABIE53_002109	0.11	-0.9
2,365,035	+		ABIE53_002109	0.11	-1.8
2,365,035	+		ABIE53_002109	0.11	+2.1
2,365,035	+		ABIE53_002109	0.11	+0.7
2,365,035	+		ABIE53_002109	0.11	+0.3
2,365,035	+		ABIE53_002109	0.11	-0.8
2,365,035	+		ABIE53_002109	0.11	+0.4
2,365,036	-		ABIE53_002109	0.11	-0.1
2,365,036	-		ABIE53_002109	0.11	+0.1
2,365,036	-		ABIE53_002109	0.11	+1.5
2,365,036	-		ABIE53_002109	0.11	+0.2
2,365,036	-		ABIE53_002109	0.11	+0.2
2,365,036	-		ABIE53_002109	0.11	+0.5
2,365,062	+		ABIE53_002109	0.13	-0.1
2,365,062	+		ABIE53_002109	0.13	+0.3
2,365,063	-		ABIE53_002109	0.13	+0.9
2,365,063	-		ABIE53_002109	0.13	-0.1
2,365,131	+		ABIE53_002109	0.19	+1.6
2,365,386	+		ABIE53_002109	0.41	-0.9
2,365,386	+		ABIE53_002109	0.41	+0.6
2,365,386	+		ABIE53_002109	0.41	-1.3
2,365,386	+		ABIE53_002109	0.41	-0.9
2,365,387	-		ABIE53_002109	0.41	+0.3
2,365,387	-		ABIE53_002109	0.41	+0.3
2,365,387	-		ABIE53_002109	0.41	-0.5
2,365,387	-		ABIE53_002109	0.41	-0.3
2,365,387	-		ABIE53_002109	0.41	+1.5
2,365,387	-		ABIE53_002109	0.41	-0.9
2,365,387	-		ABIE53_002109	0.41	+0.9
2,365,387	-		ABIE53_002109	0.41	+0.6
2,365,387	-		ABIE53_002109	0.41	+1.1
2,365,470	+		ABIE53_002109	0.49	+1.5
2,365,470	+		ABIE53_002109	0.49	-0.3
2,365,470	+		ABIE53_002109	0.49	-0.1
2,365,470	+		ABIE53_002109	0.49	-0.3
2,365,471	-		ABIE53_002109	0.49	-0.5
2,365,471	-		ABIE53_002109	0.49	-0.3
2,365,471	-		ABIE53_002109	0.49	+0.9
2,365,471	-		ABIE53_002109	0.49	-0.5
2,365,527	+		ABIE53_002109	0.54	+1.7
2,365,527	+		ABIE53_002109	0.54	-1.0
2,365,527	+		ABIE53_002109	0.54	-1.3
2,365,528	-		ABIE53_002109	0.54	+0.9
2,365,537	+		ABIE53_002109	0.55	+0.5
2,365,560	+		ABIE53_002109	0.57	+0.9
2,365,560	+		ABIE53_002109	0.57	-0.1
2,365,681	-		ABIE53_002109	0.67	+2.3
2,365,688	+		ABIE53_002109	0.68	-0.1
2,365,767	+		ABIE53_002109	0.74	-0.9
2,366,173	+		ABIE53_002110	0.28	-0.1
2,366,173	+		ABIE53_002110	0.28	-0.4
2,366,173	+		ABIE53_002110	0.28	-2.9
2,366,173	+		ABIE53_002110	0.28	+0.1
2,366,173	+		ABIE53_002110	0.28	+0.4
2,366,174	-		ABIE53_002110	0.28	-1.0
2,366,339	+		ABIE53_002110	0.72	-0.1
2,366,339	+		ABIE53_002110	0.72	-1.5
2,366,339	+		ABIE53_002110	0.72	+1.1
2,366,340	-		ABIE53_002110	0.73	-0.1
2,366,340	-		ABIE53_002110	0.73	+2.5
2,366,340	-		ABIE53_002110	0.73	+0.9
2,366,340	-		ABIE53_002110	0.73	+1.9
2,366,340	-		ABIE53_002110	0.73	+0.5
2,366,370	+		ABIE53_002110	0.81	+1.9
2,366,370	+		ABIE53_002110	0.81	-0.1
2,366,370	-		ABIE53_002110	0.81	-1.6
2,366,371	-		ABIE53_002110	0.81	-0.1
2,366,593	+				+1.1
2,366,593	+				+0.5
2,366,593	+				+0.4
2,366,594	-				+0.3
2,366,594	-				-0.3
2,366,631	-		ABIE53_002111	0.11	-0.7
2,366,709	+		ABIE53_002111	0.29	-1.1
2,366,709	+		ABIE53_002111	0.29	-1.6
2,366,710	-		ABIE53_002111	0.29	+1.1
2,366,937	+		ABIE53_002111	0.79	+2.9
2,366,975	+		ABIE53_002111	0.87	+0.3
2,366,975	+		ABIE53_002111	0.87	+0.3
2,366,975	+		ABIE53_002111	0.87	-1.6
2,366,975	+		ABIE53_002111	0.87	-1.1
2,366,975	+		ABIE53_002111	0.87	-0.6
2,366,975	+		ABIE53_002111	0.87	-1.2
2,366,975	+		ABIE53_002111	0.87	+1.5
2,366,976	-		ABIE53_002111	0.88	-1.8
2,366,976	-		ABIE53_002111	0.88	-0.6
2,366,976	-		ABIE53_002111	0.88	+1.9
2,366,976	-		ABIE53_002111	0.88	-0.4
2,366,976	-		ABIE53_002111	0.88	+0.9
2,366,976	-		ABIE53_002111	0.88	-1.3
2,366,976	-		ABIE53_002111	0.88	+0.2
2,366,976	-		ABIE53_002111	0.88	-0.7
2,366,988	+				+0.3
2,366,988	+				+0.6
2,366,988	+				+0.3
2,366,988	+				+0.6
2,366,989	-				-0.9
2,366,989	-				+1.3
2,366,989	-				+0.4
2,366,989	-				+0.3