Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0892
Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6.5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6.5 |
---|---|---|---|---|---|
remove | |||||
1,093,600 | + | -1.9 | |||
1,093,699 | + | +0.0 | |||
1,094,002 | + | BT0891 | 0.39 | -2.2 | |
1,094,004 | + | BT0891 | 0.39 | -4.4 | |
1,094,072 | + | BT0891 | 0.48 | -2.5 | |
1,094,185 | + | BT0891 | 0.62 | -2.5 | |
1,094,188 | - | BT0891 | 0.63 | -2.4 | |
1,094,241 | + | BT0891 | 0.69 | -3.3 | |
1,094,358 | + | BT0891 | 0.84 | -1.5 | |
1,094,358 | + | BT0891 | 0.84 | -2.8 | |
1,094,669 | - | BT0892 | 0.22 | -4.5 | |
1,094,732 | - | BT0892 | 0.29 | -3.2 | |
1,094,837 | - | -1.6 | |||
1,094,927 | - | BT0892 | 0.51 | -2.6 | |
1,095,470 | + | -0.1 | |||
1,095,716 | - | BT0893 | 0.18 | +0.7 | |
1,096,314 | + | -0.9 | |||
1,096,333 | + | -0.9 |
Or see this region's nucleotide sequence