Experiment: Survival in PBS at 4C, experiment1, 6 day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysS and SO0994 are separated by 111 nucleotides SO0994 and SO0995 are separated by 199 nucleotides SO0995 and SO0996 are separated by 56 nucleotides
SO0992: lysS - lysyl-tRNA synthetase (NCBI ptt file), at 1,025,577 to 1,027,079
lysS
SO0994: SO0994 - conserved hypothetical protein (NCBI ptt file), at 1,027,191 to 1,027,631
SO0994
SO0995: SO0995 - hypothetical protein (NCBI ptt file), at 1,027,831 to 1,028,025
SO0995
SO0996: SO0996 - glyoxalase family protein (NCBI ptt file), at 1,028,082 to 1,028,582
SO0996
Position (kb) 1027
1028 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1027.106 kb on - strand at 1027.106 kb on - strand at 1027.234 kb on + strand at 1027.242 kb on - strand, within SO0994 at 1027.246 kb on + strand, within SO0994 at 1027.254 kb on - strand, within SO0994 at 1027.357 kb on - strand, within SO0994 at 1027.368 kb on + strand, within SO0994 at 1027.376 kb on - strand, within SO0994 at 1027.536 kb on - strand, within SO0994 at 1027.568 kb on - strand, within SO0994 at 1027.612 kb on - strand at 1027.654 kb on + strand at 1027.720 kb on - strand at 1027.802 kb on - strand at 1027.831 kb on - strand at 1028.101 kb on + strand at 1028.196 kb on + strand, within SO0996 at 1028.223 kb on + strand, within SO0996 at 1028.317 kb on - strand, within SO0996 at 1028.326 kb on + strand, within SO0996 at 1028.433 kb on + strand, within SO0996 at 1028.433 kb on + strand, within SO0996 at 1028.475 kb on - strand, within SO0996 at 1028.490 kb on - strand, within SO0996 at 1028.506 kb on + strand, within SO0996 at 1028.514 kb on - strand, within SO0996 at 1028.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival in PBS at 4C, experiment1, 6 day remove 1,027,106 - -0.2 1,027,106 - +0.3 1,027,234 + +0.6 1,027,242 - SO0994 0.12 -1.0 1,027,246 + SO0994 0.12 -1.0 1,027,254 - SO0994 0.14 -0.2 1,027,357 - SO0994 0.38 -0.1 1,027,368 + SO0994 0.40 +0.2 1,027,376 - SO0994 0.42 -0.1 1,027,536 - SO0994 0.78 -0.8 1,027,568 - SO0994 0.85 -2.7 1,027,612 - -0.1 1,027,654 + -0.3 1,027,720 - -0.4 1,027,802 - +0.4 1,027,831 - +0.1 1,028,101 + +0.1 1,028,196 + SO0996 0.23 -0.2 1,028,223 + SO0996 0.28 +0.1 1,028,317 - SO0996 0.47 +0.9 1,028,326 + SO0996 0.49 -0.8 1,028,433 + SO0996 0.70 -0.3 1,028,433 + SO0996 0.70 +1.9 1,028,475 - SO0996 0.78 +0.4 1,028,490 - SO0996 0.81 +1.0 1,028,506 + SO0996 0.85 +0.3 1,028,514 - SO0996 0.86 +0.2 1,028,619 + +1.0
Or see this region's nucleotide sequence