Experiment: RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004000 and ABIE53_004001 overlap by 8 nucleotides ABIE53_004001 and ABIE53_004002 are separated by 337 nucleotides ABIE53_004002 and ABIE53_004003 are separated by 136 nucleotides
ABIE53_004000: ABIE53_004000 - hypothetical protein, at 157,717 to 158,106
_004000
ABIE53_004001: ABIE53_004001 - hypothetical protein, at 158,099 to 158,311
_004001
ABIE53_004002: ABIE53_004002 - outer membrane protein insertion porin family, at 158,649 to 160,958
_004002
ABIE53_004003: ABIE53_004003 - putative MFS family arabinose efflux permease, at 161,095 to 162,345
_004003
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.955 kb on - strand, within ABIE53_004000 at 157.990 kb on + strand, within ABIE53_004000 at 158.040 kb on - strand, within ABIE53_004000 at 158.364 kb on + strand at 159.112 kb on - strand, within ABIE53_004002 at 159.227 kb on + strand, within ABIE53_004002 at 159.232 kb on + strand, within ABIE53_004002 at 159.312 kb on + strand, within ABIE53_004002 at 159.358 kb on - strand, within ABIE53_004002 at 159.406 kb on + strand, within ABIE53_004002 at 159.407 kb on - strand, within ABIE53_004002 at 159.431 kb on + strand, within ABIE53_004002 at 159.432 kb on - strand, within ABIE53_004002 at 159.432 kb on - strand, within ABIE53_004002 at 159.482 kb on + strand, within ABIE53_004002 at 159.714 kb on + strand, within ABIE53_004002 at 159.718 kb on + strand, within ABIE53_004002 at 159.764 kb on - strand, within ABIE53_004002 at 160.069 kb on - strand, within ABIE53_004002 at 160.102 kb on - strand, within ABIE53_004002 at 160.156 kb on - strand, within ABIE53_004002 at 160.164 kb on + strand, within ABIE53_004002 at 160.165 kb on - strand, within ABIE53_004002 at 160.168 kb on - strand, within ABIE53_004002 at 160.245 kb on - strand, within ABIE53_004002 at 160.251 kb on + strand, within ABIE53_004002 at 160.252 kb on - strand, within ABIE53_004002 at 160.314 kb on - strand, within ABIE53_004002 at 160.320 kb on + strand, within ABIE53_004002 at 160.321 kb on - strand, within ABIE53_004002 at 160.321 kb on - strand, within ABIE53_004002 at 160.416 kb on + strand, within ABIE53_004002 at 160.470 kb on + strand, within ABIE53_004002 at 160.497 kb on + strand, within ABIE53_004002 at 160.498 kb on - strand, within ABIE53_004002 at 160.593 kb on + strand, within ABIE53_004002 at 160.594 kb on - strand, within ABIE53_004002 at 160.594 kb on - strand, within ABIE53_004002 at 160.597 kb on - strand, within ABIE53_004002 at 160.802 kb on + strand at 160.833 kb on + strand at 160.833 kb on + strand at 160.834 kb on - strand at 160.834 kb on - strand at 160.834 kb on - strand at 160.972 kb on + strand at 161.567 kb on + strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.672 kb on + strand, within ABIE53_004003 at 161.693 kb on + strand, within ABIE53_004003 at 161.693 kb on + strand, within ABIE53_004003 at 161.694 kb on - strand, within ABIE53_004003 at 161.737 kb on - strand, within ABIE53_004003 at 161.793 kb on + strand, within ABIE53_004003 at 161.794 kb on - strand, within ABIE53_004003 at 161.840 kb on - strand, within ABIE53_004003 at 161.907 kb on + strand, within ABIE53_004003
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM remove 157,955 - ABIE53_004000 0.61 +3.1 157,990 + ABIE53_004000 0.70 -0.1 158,040 - ABIE53_004000 0.83 -1.3 158,364 + -2.7 159,112 - ABIE53_004002 0.20 +1.0 159,227 + ABIE53_004002 0.25 -0.6 159,232 + ABIE53_004002 0.25 -1.5 159,312 + ABIE53_004002 0.29 +0.5 159,358 - ABIE53_004002 0.31 +2.5 159,406 + ABIE53_004002 0.33 -1.8 159,407 - ABIE53_004002 0.33 +0.0 159,431 + ABIE53_004002 0.34 -1.3 159,432 - ABIE53_004002 0.34 +0.5 159,432 - ABIE53_004002 0.34 +2.0 159,482 + ABIE53_004002 0.36 +0.5 159,714 + ABIE53_004002 0.46 -1.0 159,718 + ABIE53_004002 0.46 +0.5 159,764 - ABIE53_004002 0.48 +0.1 160,069 - ABIE53_004002 0.61 +1.8 160,102 - ABIE53_004002 0.63 +0.4 160,156 - ABIE53_004002 0.65 +0.5 160,164 + ABIE53_004002 0.66 +0.9 160,165 - ABIE53_004002 0.66 +3.5 160,168 - ABIE53_004002 0.66 +2.3 160,245 - ABIE53_004002 0.69 -0.2 160,251 + ABIE53_004002 0.69 -0.1 160,252 - ABIE53_004002 0.69 -0.4 160,314 - ABIE53_004002 0.72 +1.1 160,320 + ABIE53_004002 0.72 +0.9 160,321 - ABIE53_004002 0.72 +0.5 160,321 - ABIE53_004002 0.72 -1.2 160,416 + ABIE53_004002 0.76 -0.9 160,470 + ABIE53_004002 0.79 +0.6 160,497 + ABIE53_004002 0.80 -0.6 160,498 - ABIE53_004002 0.80 +0.0 160,593 + ABIE53_004002 0.84 -0.1 160,594 - ABIE53_004002 0.84 -1.8 160,594 - ABIE53_004002 0.84 -2.2 160,597 - ABIE53_004002 0.84 +0.2 160,802 + -0.1 160,833 + -0.5 160,833 + +2.8 160,834 - +0.2 160,834 - -1.8 160,834 - -1.4 160,972 + -1.5 161,567 + ABIE53_004003 0.38 -1.3 161,568 - ABIE53_004003 0.38 +0.4 161,568 - ABIE53_004003 0.38 -2.6 161,568 - ABIE53_004003 0.38 +0.3 161,568 - ABIE53_004003 0.38 -1.5 161,672 + ABIE53_004003 0.46 +0.3 161,693 + ABIE53_004003 0.48 +0.3 161,693 + ABIE53_004003 0.48 -0.5 161,694 - ABIE53_004003 0.48 -0.7 161,737 - ABIE53_004003 0.51 +1.5 161,793 + ABIE53_004003 0.56 -0.7 161,794 - ABIE53_004003 0.56 +0.3 161,840 - ABIE53_004003 0.60 -0.3 161,907 + ABIE53_004003 0.65 +0.8
Or see this region's nucleotide sequence