Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2465

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 7
3,085,889	-		BT2464	0.87	-0.8
3,085,903	+				-0.3
3,085,904	-				+0.2
3,085,914	-				+0.9
3,085,915	+				-0.8
3,085,915	+				-0.4
3,085,918	+				+0.2
3,085,972	+				+0.5
3,085,973	-				-0.3
3,085,976	-				-0.4
3,086,005	+				-1.8
3,086,077	-				-1.1
3,086,077	-				-0.9
3,086,086	+				-1.1
3,086,107	+				+0.5
3,086,111	+				+0.6
3,086,153	-				+0.8
3,086,153	-				+0.8
3,086,153	-				+0.8
3,086,153	-				-0.4
3,086,196	+				-0.6
3,086,264	-				-0.1
3,086,267	-				-0.2
3,086,267	-				-0.3
3,086,280	-				-0.7
3,086,282	-				+1.6
3,086,288	-				+0.2
3,086,289	+				+0.0
3,086,397	-				+0.2
3,086,410	+				-1.4
3,086,411	-				+0.5
3,086,411	-				-0.3
3,086,411	-				-1.2
3,086,412	+				-0.9
3,086,413	-				-0.0
3,086,418	+				-1.2
3,086,418	+				-1.0
3,086,421	-				-0.6
3,086,444	-				-0.5
3,086,492	-				-1.2
3,086,507	-				-0.7
3,086,508	+				+0.8
3,086,523	-				-1.0
3,086,528	+				-1.9
3,086,528	+				-0.0
3,086,528	+				+0.2
3,086,529	-				-1.0
3,086,529	-				+0.2
3,086,529	-				+0.6
3,086,578	+				-0.4
3,086,581	-				-0.1
3,086,581	-				-0.1
3,086,611	-				-1.0
3,086,628	+				-0.4
3,086,635	-				+0.6
3,086,741	+				-1.8
3,086,782	-				-0.4
3,086,787	-				-0.5
3,086,810	-				-1.0
3,086,810	-				+0.7
3,086,810	-				-3.1
3,086,830	-				-0.7
3,086,843	+				-0.0
3,086,844	-				+1.6
3,086,844	-				+0.1
3,086,852	-				-1.0
3,086,873	-				-0.9
3,086,940	-				+0.1
3,086,989	+		BT2465	0.13	-1.0
3,086,994	-		BT2465	0.13	-1.0
3,087,078	-		BT2465	0.22	-0.7
3,087,079	+		BT2465	0.23	-1.7
3,087,117	-		BT2465	0.27	-0.9
3,087,187	+		BT2465	0.34	+0.1
3,087,366	+				-1.4
3,087,370	+		BT2465	0.54	-0.6
3,087,480	-		BT2465	0.66	+0.2
3,087,480	-		BT2465	0.66	-1.4
3,087,480	-		BT2465	0.66	-1.5
3,087,483	-		BT2465	0.67	-2.0
3,087,520	-		BT2465	0.71	-1.8
3,087,569	+		BT2465	0.76	-0.0
3,087,593	+		BT2465	0.79	-0.9
3,087,685	-		BT2465	0.89	-0.0
3,087,689	-		BT2465	0.89	-0.5
3,087,765	+				-0.3
3,087,766	-				-0.2
3,087,771	-				-0.2
3,087,771	-				-0.1
3,087,811	+				-0.8
3,087,811	+				-0.2
3,087,811	+				-0.8
3,087,812	-				-2.7
3,087,812	-				-0.1
3,087,812	-				-0.0
3,087,812	-				-0.8
3,087,813	+				+0.3
3,087,816	-				+0.1
3,087,865	+				-0.8
3,087,865	+				-1.6
3,087,865	+				-0.8
3,087,922	+				-2.5
3,087,923	-				-0.8
3,088,017	+		BT2466	0.24	+0.1
3,088,018	-		BT2466	0.24	-1.4
3,088,167	-		BT2466	0.56	-0.7
3,088,175	-		BT2466	0.57	+0.6
3,088,184	+		BT2466	0.59	-1.7
3,088,184	+		BT2466	0.59	-0.5
3,088,185	-		BT2466	0.59	-0.0
3,088,199	-		BT2466	0.62	-0.6
3,088,203	+		BT2466	0.63	-1.3
3,088,204	-		BT2466	0.63	+0.9
3,088,217	-		BT2466	0.66	-0.7
3,088,252	-		BT2466	0.73	+0.7
3,088,262	+		BT2466	0.75	-2.1
3,088,292	-		BT2466	0.82	-1.1
3,088,292	-		BT2466	0.82	-0.1
3,088,370	+				-0.2
3,088,375	-				-0.4
3,088,375	-				-0.2
3,088,382	+				-1.2
3,088,394	+				-0.0
3,088,394	+				+0.7
3,088,501	+				-0.8
3,088,501	+				+1.1
3,088,502	-				+0.9
3,088,513	-				-0.4
3,088,546	+				-2.0
3,088,547	-				+0.7
3,088,547	-				-0.3
3,088,551	+				-1.2
3,088,568	+		BT2467	0.13	-0.0
3,088,577	+		BT2467	0.16	-3.0
3,088,578	-		BT2467	0.16	-0.9
3,088,578	-		BT2467	0.16	-2.0
3,088,598	-		BT2467	0.21	+0.1
3,088,598	-		BT2467	0.21	-2.1
3,088,669	-		BT2467	0.38	-1.6
3,088,702	+		BT2467	0.46	+0.6
3,088,772	-		BT2467	0.63	+0.7
3,088,779	+		BT2467	0.65	-1.1