Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0744 and BT0745 overlap by 4 nucleotides BT0745 and BT0746 are separated by 3 nucleotides BT0746 and BT0747 are separated by 83 nucleotides
BT0744: BT0744 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (NCBI ptt file), at 922,791 to 923,312
BT0744
BT0745: BT0745 - 3-deoxy-manno-octulosonate cytidylyltransferase (NCBI ptt file), at 923,309 to 924,061
BT0745
BT0746: BT0746 - putative zinc protease (NCBI ptt file), at 924,065 to 925,348
BT0746
BT0747: BT0747 - putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file), at 925,432 to 926,601
BT0747
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2 at 924.078 kb on + strand at 924.090 kb on + strand at 924.200 kb on - strand, within BT0746 at 924.320 kb on + strand, within BT0746 at 924.367 kb on + strand, within BT0746 at 924.463 kb on + strand, within BT0746 at 924.508 kb on + strand, within BT0746 at 924.645 kb on - strand, within BT0746 at 924.847 kb on + strand, within BT0746 at 924.847 kb on + strand, within BT0746 at 924.886 kb on - strand, within BT0746 at 924.937 kb on + strand, within BT0746 at 924.961 kb on + strand, within BT0746 at 925.136 kb on - strand, within BT0746 at 925.296 kb on - strand at 926.080 kb on + strand, within BT0747 at 926.214 kb on + strand, within BT0747 at 926.219 kb on - strand, within BT0747
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 7 remove 924,078 + -0.7 924,090 + +1.5 924,200 - BT0746 0.11 -1.1 924,320 + BT0746 0.20 +0.1 924,367 + BT0746 0.24 -2.2 924,463 + BT0746 0.31 -1.1 924,508 + BT0746 0.35 -0.8 924,645 - BT0746 0.45 -1.8 924,847 + BT0746 0.61 -0.1 924,847 + BT0746 0.61 -0.2 924,886 - BT0746 0.64 -1.7 924,937 + BT0746 0.68 +0.2 924,961 + BT0746 0.70 -0.4 925,136 - BT0746 0.83 +2.5 925,296 - +1.0 926,080 + BT0747 0.55 -1.5 926,214 + BT0747 0.67 -2.1 926,219 - BT0747 0.67 -0.5
Or see this region's nucleotide sequence