Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0247 and BT0248 are separated by 6 nucleotides BT0248 and BT0249 are separated by 69 nucleotides BT0249 and BT0250 are separated by 25 nucleotides
BT0247: BT0247 - hypothetical protein (NCBI ptt file), at 273,387 to 273,965
BT0247
BT0248: BT0248 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 273,972 to 274,481
BT0248
BT0249: BT0249 - 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file), at 274,551 to 275,453
BT0249
BT0250: BT0250 - dihydroorotase (DHOase) (NCBI ptt file), at 275,479 to 276,816
BT0250
Position (kb) 274
275
276 Strain fitness (log2 ratio) -2
-1
0
1
2 at 273.974 kb on - strand at 274.008 kb on - strand at 274.097 kb on + strand, within BT0248 at 274.097 kb on + strand, within BT0248 at 274.097 kb on + strand, within BT0248 at 274.179 kb on + strand, within BT0248 at 274.348 kb on + strand, within BT0248 at 274.379 kb on + strand, within BT0248 at 274.380 kb on - strand, within BT0248 at 274.383 kb on + strand, within BT0248 at 274.387 kb on + strand, within BT0248 at 274.387 kb on + strand, within BT0248 at 274.392 kb on + strand, within BT0248 at 274.392 kb on + strand, within BT0248 at 274.392 kb on + strand, within BT0248 at 274.392 kb on + strand, within BT0248 at 274.393 kb on - strand, within BT0248 at 274.542 kb on - strand at 274.616 kb on - strand at 274.831 kb on + strand, within BT0249 at 274.899 kb on + strand, within BT0249 at 274.899 kb on + strand, within BT0249 at 274.903 kb on + strand, within BT0249 at 275.011 kb on - strand, within BT0249 at 275.011 kb on - strand, within BT0249 at 275.172 kb on - strand, within BT0249 at 275.402 kb on - strand at 275.434 kb on - strand at 275.438 kb on + strand at 275.438 kb on + strand at 275.439 kb on - strand at 275.439 kb on - strand at 275.439 kb on - strand at 275.453 kb on + strand at 275.454 kb on - strand at 275.459 kb on + strand at 275.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 7 remove 273,974 - -1.1 274,008 - -1.6 274,097 + BT0248 0.25 -0.4 274,097 + BT0248 0.25 -0.6 274,097 + BT0248 0.25 +0.4 274,179 + BT0248 0.41 -0.6 274,348 + BT0248 0.74 +1.7 274,379 + BT0248 0.80 -0.1 274,380 - BT0248 0.80 +0.1 274,383 + BT0248 0.81 +1.4 274,387 + BT0248 0.81 +0.0 274,387 + BT0248 0.81 +1.3 274,392 + BT0248 0.82 -1.6 274,392 + BT0248 0.82 +2.4 274,392 + BT0248 0.82 -0.1 274,392 + BT0248 0.82 +0.0 274,393 - BT0248 0.83 -0.8 274,542 - -0.1 274,616 - -1.0 274,831 + BT0249 0.31 -1.6 274,899 + BT0249 0.39 -1.1 274,899 + BT0249 0.39 -1.6 274,903 + BT0249 0.39 -1.7 275,011 - BT0249 0.51 -1.4 275,011 - BT0249 0.51 -1.9 275,172 - BT0249 0.69 -2.1 275,402 - -0.9 275,434 - -1.1 275,438 + -0.7 275,438 + -0.2 275,439 - -0.1 275,439 - -0.9 275,439 - -0.0 275,453 + +0.4 275,454 - +0.2 275,459 + +0.7 275,460 - -0.9
Or see this region's nucleotide sequence