Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01715 and PFLU_RS01720 are separated by 139 nucleotides PFLU_RS01720 and PFLU_RS01725 are separated by 226 nucleotides PFLU_RS01725 and PFLU_RS01730 are separated by 239 nucleotides
PFLU_RS01715: PFLU_RS01715 - tRNA 4-thiouridine(8) synthase ThiI, at 380,565 to 382,019
_RS01715
PFLU_RS01720: PFLU_RS01720 - translational GTPase TypA, at 382,159 to 383,979
_RS01720
PFLU_RS01725: PFLU_RS01725 - YkgJ family cysteine cluster protein, at 384,206 to 384,640
_RS01725
PFLU_RS01730: PFLU_RS01730 - glycogen/starch/alpha-glucan phosphorylase, at 384,880 to 387,330
_RS01730
Position (kb) 382
383
384 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.017 kb on + strand at 382.017 kb on + strand at 382.018 kb on - strand at 382.018 kb on - strand at 382.100 kb on + strand at 382.100 kb on + strand at 382.100 kb on + strand at 382.100 kb on + strand at 382.100 kb on + strand at 382.100 kb on + strand at 382.101 kb on - strand at 382.101 kb on - strand at 382.101 kb on - strand at 382.101 kb on - strand at 382.101 kb on - strand at 382.101 kb on - strand at 382.101 kb on - strand at 383.982 kb on + strand at 383.982 kb on + strand at 383.982 kb on + strand at 384.070 kb on - strand at 384.120 kb on + strand at 384.120 kb on + strand at 384.120 kb on + strand at 384.120 kb on + strand at 384.120 kb on + strand at 384.121 kb on - strand at 384.130 kb on + strand at 384.131 kb on - strand at 384.131 kb on - strand at 384.131 kb on - strand at 384.131 kb on - strand at 384.197 kb on + strand at 384.197 kb on + strand at 384.197 kb on + strand at 384.215 kb on - strand at 384.215 kb on - strand at 384.245 kb on + strand at 384.245 kb on + strand at 384.245 kb on + strand at 384.245 kb on + strand at 384.245 kb on + strand at 384.246 kb on - strand at 384.246 kb on - strand at 384.246 kb on - strand at 384.246 kb on - strand at 384.246 kb on - strand at 384.246 kb on - strand at 384.259 kb on + strand, within PFLU_RS01725 at 384.259 kb on + strand, within PFLU_RS01725 at 384.260 kb on - strand, within PFLU_RS01725 at 384.260 kb on - strand, within PFLU_RS01725 at 384.260 kb on - strand, within PFLU_RS01725 at 384.260 kb on - strand, within PFLU_RS01725 at 384.260 kb on - strand, within PFLU_RS01725 at 384.260 kb on - strand, within PFLU_RS01725 at 384.260 kb on - strand, within PFLU_RS01725 at 384.261 kb on + strand, within PFLU_RS01725 at 384.261 kb on + strand, within PFLU_RS01725 at 384.261 kb on + strand, within PFLU_RS01725 at 384.261 kb on + strand, within PFLU_RS01725 at 384.261 kb on + strand, within PFLU_RS01725 at 384.261 kb on + strand, within PFLU_RS01725 at 384.261 kb on + strand, within PFLU_RS01725 at 384.261 kb on + strand, within PFLU_RS01725 at 384.262 kb on - strand, within PFLU_RS01725 at 384.262 kb on - strand, within PFLU_RS01725 at 384.262 kb on - strand, within PFLU_RS01725 at 384.262 kb on - strand, within PFLU_RS01725 at 384.262 kb on - strand, within PFLU_RS01725 at 384.262 kb on - strand, within PFLU_RS01725 at 384.262 kb on - strand, within PFLU_RS01725 at 384.270 kb on + strand, within PFLU_RS01725 at 384.327 kb on + strand, within PFLU_RS01725 at 384.327 kb on + strand, within PFLU_RS01725 at 384.328 kb on - strand, within PFLU_RS01725 at 384.331 kb on + strand, within PFLU_RS01725 at 384.331 kb on + strand, within PFLU_RS01725 at 384.331 kb on + strand, within PFLU_RS01725 at 384.331 kb on + strand, within PFLU_RS01725 at 384.331 kb on + strand, within PFLU_RS01725 at 384.331 kb on + strand, within PFLU_RS01725 at 384.332 kb on - strand, within PFLU_RS01725 at 384.332 kb on - strand, within PFLU_RS01725 at 384.332 kb on - strand, within PFLU_RS01725 at 384.332 kb on - strand, within PFLU_RS01725 at 384.332 kb on - strand, within PFLU_RS01725 at 384.332 kb on - strand, within PFLU_RS01725 at 384.349 kb on + strand, within PFLU_RS01725 at 384.349 kb on + strand, within PFLU_RS01725 at 384.350 kb on - strand, within PFLU_RS01725 at 384.361 kb on - strand, within PFLU_RS01725 at 384.394 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.571 kb on + strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.572 kb on - strand, within PFLU_RS01725 at 384.661 kb on + strand at 384.661 kb on + strand at 384.661 kb on + strand at 384.661 kb on + strand at 384.661 kb on + strand at 384.661 kb on + strand at 384.662 kb on - strand at 384.662 kb on - strand at 384.662 kb on - strand at 384.662 kb on - strand at 384.662 kb on - strand at 384.682 kb on - strand at 384.769 kb on + strand at 384.769 kb on + strand at 384.769 kb on + strand at 384.770 kb on - strand at 384.793 kb on + strand at 384.837 kb on + strand at 384.837 kb on + strand at 384.837 kb on + strand at 384.838 kb on - strand at 384.838 kb on - strand at 384.844 kb on + strand at 384.844 kb on + strand at 384.844 kb on + strand at 384.844 kb on + strand at 384.845 kb on - strand at 384.845 kb on - strand at 384.845 kb on - strand at 384.845 kb on - strand at 384.845 kb on - strand at 384.845 kb on - strand at 384.857 kb on + strand at 384.857 kb on + strand at 384.857 kb on + strand at 384.858 kb on - strand at 384.858 kb on - strand at 384.858 kb on - strand at 384.858 kb on - strand at 384.858 kb on - strand at 384.914 kb on + strand at 384.952 kb on + strand at 384.952 kb on + strand at 384.952 kb on + strand at 384.953 kb on - strand at 384.953 kb on - strand at 384.953 kb on - strand at 384.953 kb on - strand at 384.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) and Ammonium chloride (N); with TAPS remove 382,017 + +0.1 382,017 + -0.6 382,018 - -0.2 382,018 - -0.3 382,100 + +0.5 382,100 + +1.1 382,100 + +0.9 382,100 + +1.1 382,100 + -0.0 382,100 + -0.8 382,101 - +0.1 382,101 - +1.1 382,101 - +0.2 382,101 - +2.0 382,101 - +0.3 382,101 - -0.1 382,101 - -0.7 383,982 + -0.8 383,982 + +0.8 383,982 + +0.5 384,070 - +0.5 384,120 + +0.3 384,120 + +0.4 384,120 + -1.0 384,120 + -0.6 384,120 + +1.0 384,121 - -0.7 384,130 + +1.4 384,131 - -0.5 384,131 - -0.2 384,131 - +0.2 384,131 - -0.9 384,197 + +0.0 384,197 + +0.7 384,197 + -0.3 384,215 - +0.2 384,215 - +1.1 384,245 + -0.1 384,245 + -0.2 384,245 + +1.0 384,245 + -0.5 384,245 + +0.0 384,246 - +0.3 384,246 - -0.1 384,246 - +0.0 384,246 - +0.6 384,246 - +0.0 384,246 - -1.5 384,259 + PFLU_RS01725 0.12 -1.3 384,259 + PFLU_RS01725 0.12 +0.3 384,260 - PFLU_RS01725 0.12 +0.1 384,260 - PFLU_RS01725 0.12 +0.1 384,260 - PFLU_RS01725 0.12 +0.4 384,260 - PFLU_RS01725 0.12 +1.2 384,260 - PFLU_RS01725 0.12 +1.1 384,260 - PFLU_RS01725 0.12 -1.5 384,260 - PFLU_RS01725 0.12 +0.4 384,261 + PFLU_RS01725 0.13 -0.2 384,261 + PFLU_RS01725 0.13 +0.8 384,261 + PFLU_RS01725 0.13 -0.4 384,261 + PFLU_RS01725 0.13 +1.4 384,261 + PFLU_RS01725 0.13 +0.0 384,261 + PFLU_RS01725 0.13 -1.5 384,261 + PFLU_RS01725 0.13 -1.6 384,261 + PFLU_RS01725 0.13 -1.1 384,262 - PFLU_RS01725 0.13 +0.2 384,262 - PFLU_RS01725 0.13 -0.7 384,262 - PFLU_RS01725 0.13 +1.0 384,262 - PFLU_RS01725 0.13 +0.5 384,262 - PFLU_RS01725 0.13 +0.9 384,262 - PFLU_RS01725 0.13 +0.7 384,262 - PFLU_RS01725 0.13 +0.0 384,270 + PFLU_RS01725 0.15 -0.2 384,327 + PFLU_RS01725 0.28 -0.1 384,327 + PFLU_RS01725 0.28 -2.4 384,328 - PFLU_RS01725 0.28 +0.3 384,331 + PFLU_RS01725 0.29 +0.6 384,331 + PFLU_RS01725 0.29 +0.6 384,331 + PFLU_RS01725 0.29 -0.7 384,331 + PFLU_RS01725 0.29 +0.6 384,331 + PFLU_RS01725 0.29 +0.4 384,331 + PFLU_RS01725 0.29 +1.0 384,332 - PFLU_RS01725 0.29 +0.2 384,332 - PFLU_RS01725 0.29 -0.1 384,332 - PFLU_RS01725 0.29 +1.1 384,332 - PFLU_RS01725 0.29 -1.2 384,332 - PFLU_RS01725 0.29 -0.7 384,332 - PFLU_RS01725 0.29 +0.1 384,349 + PFLU_RS01725 0.33 -0.6 384,349 + PFLU_RS01725 0.33 +0.3 384,350 - PFLU_RS01725 0.33 +1.1 384,361 - PFLU_RS01725 0.36 +1.1 384,394 + PFLU_RS01725 0.43 +1.1 384,571 + PFLU_RS01725 0.84 +0.5 384,571 + PFLU_RS01725 0.84 +0.4 384,571 + PFLU_RS01725 0.84 +0.3 384,571 + PFLU_RS01725 0.84 +0.3 384,571 + PFLU_RS01725 0.84 +0.7 384,571 + PFLU_RS01725 0.84 +0.9 384,571 + PFLU_RS01725 0.84 -0.7 384,571 + PFLU_RS01725 0.84 -1.1 384,571 + PFLU_RS01725 0.84 +1.0 384,571 + PFLU_RS01725 0.84 -0.3 384,571 + PFLU_RS01725 0.84 -0.1 384,571 + PFLU_RS01725 0.84 +1.1 384,572 - PFLU_RS01725 0.84 +0.6 384,572 - PFLU_RS01725 0.84 -0.1 384,572 - PFLU_RS01725 0.84 -0.1 384,572 - PFLU_RS01725 0.84 +0.4 384,572 - PFLU_RS01725 0.84 +0.9 384,572 - PFLU_RS01725 0.84 -0.7 384,572 - PFLU_RS01725 0.84 +0.0 384,572 - PFLU_RS01725 0.84 +0.1 384,572 - PFLU_RS01725 0.84 +0.6 384,572 - PFLU_RS01725 0.84 +1.4 384,572 - PFLU_RS01725 0.84 -0.0 384,661 + -0.6 384,661 + +0.3 384,661 + +0.7 384,661 + +1.5 384,661 + +0.8 384,661 + -2.3 384,662 - -1.3 384,662 - +1.0 384,662 - +0.4 384,662 - -0.4 384,662 - +0.7 384,682 - +0.9 384,769 + -1.7 384,769 + +0.0 384,769 + -0.1 384,770 - -0.6 384,793 + +0.3 384,837 + +0.9 384,837 + +0.1 384,837 + +0.2 384,838 - -2.2 384,838 - -0.5 384,844 + +0.9 384,844 + -0.9 384,844 + +0.3 384,844 + +1.1 384,845 - -0.6 384,845 - -0.6 384,845 - -1.0 384,845 - -0.1 384,845 - +0.2 384,845 - -0.3 384,857 + +0.3 384,857 + +2.4 384,857 + +0.9 384,858 - -1.3 384,858 - -1.6 384,858 - -0.3 384,858 - -2.0 384,858 - +1.6 384,914 + +0.3 384,952 + +0.9 384,952 + -1.1 384,952 + -1.3 384,953 - -2.3 384,953 - +1.9 384,953 - -2.6 384,953 - -1.2 384,953 - -1.0
Or see this region's nucleotide sequence