Experiment: Varel_Bryant_medium_Glucose; pH 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0789 and BT0790 are separated by 50 nucleotides BT0790 and BT0791 are separated by 340 nucleotides
BT0789: BT0789 - malonyl CoA-acyl carrier protein transacylase (NCBI ptt file), at 978,557 to 979,444
BT0789
BT0790: BT0790 - phosphomethylpyrimidine kinase (NCBI ptt file), at 979,495 to 980,331
BT0790
BT0791: BT0791 - conserved hypothetical protein (NCBI ptt file), at 980,672 to 981,403
BT0791
Position (kb) 979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 978.523 kb on + strand at 978.524 kb on - strand at 978.542 kb on + strand at 978.559 kb on - strand at 979.573 kb on + strand at 979.573 kb on + strand at 979.573 kb on + strand at 979.608 kb on + strand, within BT0790 at 979.721 kb on - strand, within BT0790 at 979.737 kb on - strand, within BT0790 at 979.742 kb on + strand, within BT0790 at 979.765 kb on + strand, within BT0790 at 979.925 kb on - strand, within BT0790 at 980.018 kb on + strand, within BT0790 at 980.240 kb on - strand, within BT0790 at 980.412 kb on - strand at 980.773 kb on - strand, within BT0791 at 980.805 kb on - strand, within BT0791 at 980.837 kb on + strand, within BT0791 at 980.837 kb on + strand, within BT0791 at 980.838 kb on - strand, within BT0791 at 980.875 kb on - strand, within BT0791 at 980.875 kb on - strand, within BT0791 at 980.984 kb on - strand, within BT0791 at 981.153 kb on - strand, within BT0791 at 981.184 kb on + strand, within BT0791 at 981.185 kb on - strand, within BT0791 at 981.251 kb on + strand, within BT0791 at 981.306 kb on - strand, within BT0791 at 981.309 kb on + strand, within BT0791 at 981.310 kb on - strand, within BT0791
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose; pH 7 remove 978,523 + +0.3 978,524 - -1.0 978,542 + -1.3 978,559 - +0.5 979,573 + -1.3 979,573 + -1.0 979,573 + -1.0 979,608 + BT0790 0.14 -1.3 979,721 - BT0790 0.27 -1.0 979,737 - BT0790 0.29 -2.3 979,742 + BT0790 0.30 -2.3 979,765 + BT0790 0.32 -1.5 979,925 - BT0790 0.51 -3.6 980,018 + BT0790 0.62 +0.7 980,240 - BT0790 0.89 -1.9 980,412 - -2.3 980,773 - BT0791 0.14 -1.0 980,805 - BT0791 0.18 +0.9 980,837 + BT0791 0.23 -0.1 980,837 + BT0791 0.23 -0.7 980,838 - BT0791 0.23 -1.4 980,875 - BT0791 0.28 +1.0 980,875 - BT0791 0.28 +0.8 980,984 - BT0791 0.43 -0.3 981,153 - BT0791 0.66 +0.5 981,184 + BT0791 0.70 +0.0 981,185 - BT0791 0.70 +1.1 981,251 + BT0791 0.79 +1.0 981,306 - BT0791 0.87 -2.1 981,309 + BT0791 0.87 +0.7 981,310 - BT0791 0.87 +0.2
Or see this region's nucleotide sequence