Experiment: Survival in PBS at 22C, experiment1, 1 day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3393 and SO3395 are separated by 154 nucleotides SO3395 and SO_3396 are separated by 318 nucleotides SO_3396 and SO3397 are separated by 160 nucleotides SO3397 and SO3398 are separated by 59 nucleotides
SO3393: SO3393 - transcriptional regulator, TetR family (NCBI ptt file), at 3,534,653 to 3,535,234
SO3393
SO3395: SO3395 - hypothetical protein (NCBI ptt file), at 3,535,389 to 3,535,613
SO3395
SO_3396: SO_3396 - no description, at 3,535,932 to 3,537,377
_3396
SO3397: SO3397 - ISSod1, transposase OrfA (NCBI ptt file), at 3,537,538 to 3,537,828
SO3397
SO3398: SO3398 - ISSod1, transposase OrfB (NCBI ptt file), at 3,537,888 to 3,538,697
SO3398
Position (kb) 3535
3536
3537
3538 Strain fitness (log2 ratio) -1
0
1 at 3534.973 kb on - strand, within SO3393 at 3535.006 kb on + strand, within SO3393 at 3535.623 kb on - strand at 3535.745 kb on + strand at 3535.861 kb on + strand at 3536.003 kb on - strand at 3536.011 kb on - strand at 3536.063 kb on + strand at 3536.156 kb on - strand, within SO_3396 at 3536.427 kb on + strand, within SO_3396 at 3536.449 kb on - strand, within SO_3396 at 3536.565 kb on + strand, within SO_3396 at 3536.578 kb on - strand, within SO_3396 at 3536.589 kb on - strand, within SO_3396 at 3536.599 kb on - strand, within SO_3396 at 3536.612 kb on + strand, within SO_3396 at 3536.640 kb on + strand, within SO_3396 at 3536.640 kb on + strand, within SO_3396 at 3536.640 kb on + strand, within SO_3396 at 3536.648 kb on - strand, within SO_3396 at 3536.745 kb on - strand, within SO_3396 at 3536.862 kb on + strand, within SO_3396 at 3536.898 kb on - strand, within SO_3396 at 3537.059 kb on - strand, within SO_3396 at 3537.069 kb on + strand, within SO_3396 at 3537.087 kb on - strand, within SO_3396 at 3537.087 kb on - strand, within SO_3396 at 3537.250 kb on - strand at 3537.285 kb on - strand at 3537.304 kb on - strand at 3537.305 kb on - strand at 3537.348 kb on + strand at 3537.348 kb on + strand at 3537.443 kb on + strand at 3537.480 kb on - strand at 3537.485 kb on - strand at 3537.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival in PBS at 22C, experiment1, 1 day remove 3,534,973 - SO3393 0.55 -0.4 3,535,006 + SO3393 0.61 -1.1 3,535,623 - -0.8 3,535,745 + -0.1 3,535,861 + +0.2 3,536,003 - -0.2 3,536,011 - -0.9 3,536,063 + -0.2 3,536,156 - SO_3396 0.15 +0.5 3,536,427 + SO_3396 0.34 +0.8 3,536,449 - SO_3396 0.36 -0.5 3,536,565 + SO_3396 0.44 +0.2 3,536,578 - SO_3396 0.45 -0.7 3,536,589 - SO_3396 0.45 +0.4 3,536,599 - SO_3396 0.46 +0.7 3,536,612 + SO_3396 0.47 +0.5 3,536,640 + SO_3396 0.49 +0.7 3,536,640 + SO_3396 0.49 +0.4 3,536,640 + SO_3396 0.49 +0.3 3,536,648 - SO_3396 0.50 +0.2 3,536,745 - SO_3396 0.56 +0.4 3,536,862 + SO_3396 0.64 +0.4 3,536,898 - SO_3396 0.67 -0.0 3,537,059 - SO_3396 0.78 -0.8 3,537,069 + SO_3396 0.79 -0.2 3,537,087 - SO_3396 0.80 +0.8 3,537,087 - SO_3396 0.80 +0.3 3,537,250 - -0.2 3,537,285 - +0.4 3,537,304 - -0.5 3,537,305 - -1.0 3,537,348 + -0.3 3,537,348 + +0.6 3,537,443 + +0.2 3,537,480 - +0.3 3,537,485 - +0.9 3,537,485 - +0.2
Or see this region's nucleotide sequence