Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3495

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6
4,507,329	+		BT3494	0.60	-2.2
4,507,348	+		BT3494	0.61	-1.4
4,507,348	+		BT3494	0.61	-0.8
4,507,349	-		BT3494	0.61	+0.9
4,507,402	+		BT3494	0.63	-0.7
4,507,403	-		BT3494	0.63	+2.0
4,507,403	-		BT3494	0.63	-1.1
4,507,435	-		BT3494	0.65	-1.4
4,507,468	+		BT3494	0.66	-1.4
4,507,478	+		BT3494	0.66	+1.8
4,507,478	+		BT3494	0.66	+1.3
4,507,529	-		BT3494	0.69	-0.2
4,507,529	-		BT3494	0.69	-1.7
4,507,529	-		BT3494	0.69	-0.1
4,507,668	+		BT3494	0.75	-3.0
4,507,671	-		BT3494	0.75	-2.4
4,507,714	+		BT3494	0.77	+0.5
4,507,715	-		BT3494	0.77	-0.8
4,507,756	+		BT3494	0.78	+1.2
4,507,815	-		BT3494	0.81	-1.2
4,507,833	+		BT3494	0.82	+0.3
4,507,909	+		BT3494	0.85	-1.2
4,507,920	-		BT3494	0.85	-0.3
4,507,934	-		BT3494	0.86	+0.7
4,507,937	+		BT3494	0.86	+0.6
4,507,959	-		BT3494	0.87	-0.6
4,507,983	+		BT3494	0.88	+0.8
4,508,007	-		BT3494	0.89	-0.9
4,508,009	+		BT3494	0.89	-2.5
4,508,025	-		BT3494	0.90	-2.0
4,508,080	-				-1.9
4,508,081	+				-0.6
4,508,082	-				-1.6
4,508,082	-				-0.7
4,508,082	-				+1.7
4,508,095	-				-0.5
4,508,120	+				-3.7
4,508,121	-				+2.7
4,508,130	-				+0.6
4,508,166	-				-1.9
4,508,246	-				-2.1
4,508,298	-				-3.0
4,508,298	-				-2.9
4,508,324	+				+1.4
4,508,342	-				+0.6
4,508,342	-				-0.8
4,508,441	-				-2.1
4,508,505	+		BT3495	0.11	-1.0
4,508,506	-		BT3495	0.11	+0.9
4,508,509	+		BT3495	0.11	+0.3
4,508,509	+		BT3495	0.11	-0.7
4,508,510	-		BT3495	0.11	-1.7
4,508,564	-		BT3495	0.14	+0.2
4,508,566	-		BT3495	0.14	-1.3
4,508,587	+		BT3495	0.15	-2.1
4,508,610	+		BT3495	0.16	-1.0
4,508,663	-		BT3495	0.19	-0.3
4,508,710	+		BT3495	0.21	-0.6
4,508,866	+		BT3495	0.29	+0.2
4,508,866	+		BT3495	0.29	-2.0
4,508,868	+		BT3495	0.29	-0.8
4,508,869	-		BT3495	0.29	-2.0
4,509,000	-		BT3495	0.35	-1.8
4,509,003	+		BT3495	0.35	-2.2
4,509,033	-		BT3495	0.37	+0.0
4,509,074	-		BT3495	0.39	-2.0
4,509,134	+		BT3495	0.42	-2.5
4,509,134	+		BT3495	0.42	-2.5
4,509,136	+		BT3495	0.42	-1.6
4,509,143	+		BT3495	0.42	-1.7
4,509,144	-		BT3495	0.42	-2.5
4,509,145	+		BT3495	0.42	+0.5
4,509,145	+		BT3495	0.42	-2.3
4,509,162	+		BT3495	0.43	-0.0
4,509,162	+		BT3495	0.43	-2.1
4,509,163	-		BT3495	0.43	-1.0
4,509,205	+		BT3495	0.45	-1.8
4,509,215	+		BT3495	0.45	-0.8
4,509,219	+		BT3495	0.46	-0.1
4,509,220	-		BT3495	0.46	-1.4
4,509,296	+		BT3495	0.49	-3.6
4,509,300	+		BT3495	0.50	-1.8
4,509,301	-		BT3495	0.50	-0.8
4,509,301	-		BT3495	0.50	-0.9
4,509,302	+		BT3495	0.50	-0.5
4,509,305	+		BT3495	0.50	-2.7
4,509,305	+		BT3495	0.50	+1.0
4,509,391	-		BT3495	0.54	-1.8
4,509,409	-		BT3495	0.55	-1.2
4,509,442	+		BT3495	0.56	+0.6
4,509,447	+		BT3495	0.57	-1.2
4,509,488	-		BT3495	0.59	-2.8
4,509,505	+		BT3495	0.60	-1.5
4,509,558	+		BT3495	0.62	-1.9
4,509,573	+		BT3495	0.63	+0.4
4,509,574	-		BT3495	0.63	-2.8
4,509,574	-		BT3495	0.63	-1.1
4,509,605	-		BT3495	0.64	+0.5
4,509,605	-		BT3495	0.64	+1.1
4,509,629	-		BT3495	0.66	-2.1
4,509,662	-		BT3495	0.67	+1.2
4,509,697	-		BT3495	0.69	-2.7
4,509,705	-		BT3495	0.69	+0.1
4,509,734	-		BT3495	0.71	+0.2
4,509,734	-		BT3495	0.71	-1.8
4,509,781	+		BT3495	0.73	+1.3
4,509,811	-		BT3495	0.74	+1.8
4,509,833	-		BT3495	0.75	-1.0
4,509,878	-		BT3495	0.78	-2.1
4,509,878	-		BT3495	0.78	-0.2
4,509,878	-		BT3495	0.78	-0.8
4,509,889	-		BT3495	0.78	-3.7
4,509,909	+		BT3495	0.79	-0.5
4,509,909	+		BT3495	0.79	-2.4
4,509,914	-		BT3495	0.79	-2.1
4,509,919	-		BT3495	0.80	+1.6
4,510,000	-		BT3495	0.83	-2.4
4,510,032	+		BT3495	0.85	-0.7
4,510,034	+		BT3495	0.85	-0.8
4,510,036	+		BT3495	0.85	-1.9
4,510,037	-		BT3495	0.85	-1.3
4,510,060	-		BT3495	0.86	-1.8
4,510,085	+		BT3495	0.88	-0.5
4,510,146	-				+0.8
4,510,213	-				+0.2
4,510,242	+				+0.1
4,510,254	+				-0.1
4,510,300	-				-1.8
4,510,340	-				-1.2
4,510,362	-				-0.9
4,510,377	-				-2.6
4,510,399	+				-1.2
4,510,455	+				-0.5
4,510,456	-				-0.7
4,510,457	+				+1.4
4,510,458	-				-0.8
4,510,497	-		BT3496	0.14	-0.6
4,510,513	-		BT3496	0.15	-0.7
4,510,537	-		BT3496	0.18	-0.8
4,510,538	+		BT3496	0.18	-1.6
4,510,547	+		BT3496	0.19	+0.5
4,510,586	-		BT3496	0.22	+0.1
4,510,627	+		BT3496	0.27	-0.2
4,510,633	+		BT3496	0.27	-0.6
4,510,733	-		BT3496	0.37	-2.2
4,510,738	-		BT3496	0.38	+2.9
4,510,746	-		BT3496	0.38	+1.2
4,510,748	-		BT3496	0.39	-0.6
4,510,781	+		BT3496	0.42	+0.4
4,510,828	-		BT3496	0.47	-0.1
4,510,845	-		BT3496	0.48	-0.6
4,510,899	-		BT3496	0.54	+0.4
4,510,903	-		BT3496	0.54	-0.0
4,510,904	-		BT3496	0.54	-3.7
4,510,910	+		BT3496	0.55	-1.3
4,510,919	-		BT3496	0.56	-2.4
4,510,919	-		BT3496	0.56	-2.1
4,510,933	+		BT3496	0.57	-0.0
4,510,934	-		BT3496	0.57	-1.9
4,510,986	+		BT3496	0.62	-0.2
4,510,986	+		BT3496	0.62	-1.2
4,510,986	+		BT3496	0.62	-4.6
4,510,987	-		BT3496	0.63	+1.1
4,510,987	-		BT3496	0.63	-0.7
4,511,006	+		BT3496	0.64	+0.5
4,511,017	-		BT3496	0.66	-1.6
4,511,025	-		BT3496	0.66	-2.2
4,511,135	+		BT3496	0.77	+0.6
4,511,144	+		BT3496	0.78	-0.7
4,511,154	-		BT3496	0.79	+0.1
4,511,156	+		BT3496	0.79	+0.1
4,511,161	-		BT3496	0.80	+0.2
4,511,161	-		BT3496	0.80	+1.9
4,511,197	+		BT3496	0.84	-1.5
4,511,207	+		BT3496	0.85	-0.2
4,511,208	-		BT3496	0.85	-0.7
4,511,249	+		BT3496	0.89	-1.2
4,511,250	-		BT3496	0.89	-0.7
4,511,250	-		BT3496	0.89	-1.9
4,511,250	-		BT3496	0.89	+0.5
4,511,295	-				+0.0
4,511,295	-				-2.2
4,511,315	+				+0.4
4,511,315	+				+0.5
4,511,319	-				-1.4
4,511,319	-				-0.0