Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2599

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6
3,238,007	+				+0.2
3,238,008	-				+0.5
3,238,010	-				-2.8
3,238,100	+				-0.1
3,238,100	+				-2.9
3,238,101	-		BT2597	0.17	+0.5
3,238,103	+		BT2597	0.17	-0.7
3,238,110	+		BT2597	0.20	+0.7
3,238,141	+		BT2597	0.30	-1.4
3,238,218	+		BT2597	0.56	+0.9
3,238,219	-		BT2597	0.56	-1.2
3,238,306	+		BT2597	0.85	+0.2
3,238,510	+		BT2598	0.26	+0.4
3,238,511	-		BT2598	0.26	-1.9
3,238,526	-		BT2598	0.29	-1.5
3,238,526	-		BT2598	0.29	-2.0
3,238,526	-		BT2598	0.29	-0.8
3,238,604	-		BT2598	0.41	-2.2
3,238,631	-		BT2598	0.46	-3.1
3,238,822	+		BT2598	0.76	-0.2
3,238,822	+		BT2598	0.76	-0.9
3,238,823	-		BT2598	0.76	-2.1
3,238,899	+		BT2598	0.88	-1.0
3,238,899	+		BT2598	0.88	-1.0
3,239,004	+				-1.1
3,239,006	+				+0.3
3,239,066	+				+1.0
3,239,152	+		BT2599	0.16	-2.5
3,239,185	+		BT2599	0.19	+0.9
3,239,241	-		BT2599	0.25	-1.5
3,239,265	+		BT2599	0.27	-0.1
3,239,314	+		BT2599	0.32	-0.4
3,239,314	+		BT2599	0.32	+1.5
3,239,322	+		BT2599	0.33	-0.4
3,239,322	+		BT2599	0.33	-2.3
3,239,322	+		BT2599	0.33	+0.9
3,239,324	+		BT2599	0.33	+2.4
3,239,324	+		BT2599	0.33	+2.0
3,239,324	+		BT2599	0.33	-0.0
3,239,326	+		BT2599	0.33	+1.3
3,239,326	+		BT2599	0.33	+1.7
3,239,436	-		BT2599	0.44	-1.3
3,239,515	+		BT2599	0.52	-0.6
3,239,515	+		BT2599	0.52	-0.4
3,239,515	+		BT2599	0.52	-3.8
3,239,533	+		BT2599	0.53	-2.5
3,239,740	-		BT2599	0.74	+0.6
3,239,740	-		BT2599	0.74	+0.8
3,239,875	+		BT2599	0.87	-2.2
3,239,875	+		BT2599	0.87	-3.9
3,239,950	+				-0.1
3,239,951	-				-1.0
3,239,964	+				+0.0
3,240,005	+				-0.7
3,240,005	+				+0.3
3,240,005	+				-2.3
3,240,005	+				+0.3
3,240,006	-				-0.7
3,240,006	-				-2.2
3,240,016	+				-1.4
3,240,016	+				-0.4
3,240,037	+				+0.0
3,240,037	+				+0.4
3,240,111	-		BT2600	0.16	-2.0
3,240,214	-		BT2600	0.32	+0.2
3,240,263	+		BT2600	0.39	+1.0
3,240,341	-		BT2600	0.51	-2.1
3,240,341	-		BT2600	0.51	-0.5
3,240,433	+		BT2600	0.66	-2.8
3,240,433	+		BT2600	0.66	-0.8
3,240,515	+		BT2600	0.78	-2.3
3,240,612	-				-0.7
3,240,637	-				+0.4
3,240,720	+		BT2601	0.19	-0.4
3,240,721	-		BT2601	0.19	+0.3
3,240,721	-		BT2601	0.19	-1.2
3,240,840	+		BT2601	0.51	-0.4
3,240,840	+		BT2601	0.51	-3.3
3,240,877	+		BT2601	0.61	+0.5
3,240,878	-		BT2601	0.61	-2.6
3,240,950	+		BT2601	0.81	-0.4