Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1035

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6
1,303,979	+		BT1034	0.44	-0.8
1,303,979	+		BT1034	0.44	-2.1
1,303,981	+		BT1034	0.44	+0.1
1,303,981	+		BT1034	0.44	-1.1
1,303,984	+		BT1034	0.44	+0.0
1,304,271	+		BT1034	0.66	-1.1
1,304,298	-		BT1034	0.68	+0.7
1,304,333	+		BT1034	0.71	-0.5
1,304,336	-		BT1034	0.71	-0.9
1,304,452	+		BT1034	0.80	-0.0
1,304,453	-		BT1034	0.80	+1.6
1,304,553	+		BT1034	0.87	-1.9
1,304,553	+		BT1034	0.87	+0.6
1,304,657	+				-0.1
1,304,732	+				+0.4
1,304,736	-				-0.1
1,304,769	+				-1.6
1,304,772	-				+0.9
1,304,773	+				-1.6
1,304,774	-				-3.0
1,304,776	-				-3.7
1,304,778	+				-0.6
1,304,779	-				-1.1
1,305,020	+				-1.8
1,305,022	+				+0.5
1,305,023	-				-0.8
1,305,108	+		BT1035	0.13	-1.9
1,305,113	+		BT1035	0.13	+0.0
1,305,114	-		BT1035	0.13	-0.0
1,305,118	-		BT1035	0.13	+1.5
1,305,314	+		BT1035	0.22	-2.4
1,305,316	+		BT1035	0.22	+0.1
1,305,566	+		BT1035	0.34	+1.3
1,305,679	+		BT1035	0.39	-0.8
1,305,680	-		BT1035	0.39	+1.0
1,305,691	+		BT1035	0.39	-1.8
1,305,872	+		BT1035	0.48	-2.7
1,305,876	-		BT1035	0.48	+0.4
1,305,926	+		BT1035	0.50	-3.3
1,306,175	+		BT1035	0.61	-3.4
1,306,199	-		BT1035	0.62	+1.6
1,306,230	-		BT1035	0.64	+2.1
1,306,240	+		BT1035	0.64	+1.9
1,306,271	+		BT1035	0.66	+0.9
1,306,271	+		BT1035	0.66	-1.1
1,306,272	-		BT1035	0.66	-0.3
1,306,272	-		BT1035	0.66	-1.4
1,306,272	-		BT1035	0.66	-0.5
1,306,298	+		BT1035	0.67	-0.4
1,306,340	+		BT1035	0.69	-3.1
1,306,385	+		BT1035	0.71	-0.6
1,306,391	-		BT1035	0.71	+1.6
1,306,396	+		BT1035	0.71	+1.1
1,306,421	-		BT1035	0.72	-0.7
1,306,451	+		BT1035	0.74	-1.6
1,306,512	-		BT1035	0.77	+0.9
1,306,513	+		BT1035	0.77	+0.5
1,306,516	-		BT1035	0.77	-0.4
1,306,516	-		BT1035	0.77	-2.4
1,306,537	+		BT1035	0.78	+0.5
1,306,537	+		BT1035	0.78	+0.5
1,306,538	-		BT1035	0.78	-4.4
1,306,642	+		BT1035	0.82	-0.2
1,306,734	-		BT1035	0.87	-0.1
1,306,785	+		BT1035	0.89	-0.1
1,306,785	+		BT1035	0.89	+0.7
1,306,788	-		BT1035	0.89	+1.6
1,306,934	+				+0.1
1,306,969	+				-2.6
1,306,970	-				+1.5
1,307,073	-				-1.1
1,307,223	+				+0.2
1,307,224	-				-1.2
1,307,224	-				-2.1
1,307,226	+				-0.2
1,307,230	-				+0.0
1,307,307	-				-0.4
1,307,307	-				+0.5
1,307,367	+		BT1036	0.13	+0.2
1,307,367	+		BT1036	0.13	-1.3
1,307,380	-		BT1036	0.14	-1.4
1,307,437	-		BT1036	0.18	+1.5
1,307,467	+		BT1036	0.20	-0.8
1,307,467	+		BT1036	0.20	-1.4
1,307,486	+		BT1036	0.22	+0.1
1,307,610	+		BT1036	0.31	-0.6
1,307,613	-		BT1036	0.31	-1.9
1,307,613	-		BT1036	0.31	-2.4
1,307,644	+		BT1036	0.33	-1.5
1,307,681	+		BT1036	0.36	+1.3
1,307,681	+		BT1036	0.36	-0.7
1,307,686	-		BT1036	0.36	-1.1
1,307,709	+		BT1036	0.38	-1.0
1,307,811	-		BT1036	0.46	-2.4
1,307,860	-		BT1036	0.49	-0.4
1,307,869	-		BT1036	0.50	-1.1
1,307,935	+		BT1036	0.55	-0.1
1,307,955	+		BT1036	0.56	-0.2