Experiment: Survival in PBS at 4C, experiment2, 1 day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0939 and SO0940 are separated by 441 nucleotides SO0940 and SO0941 overlap by 8 nucleotides SO0941 and SO0942 are separated by 84 nucleotides
SO0939: SO0939 - cytochrome c, putative (NCBI ptt file), at 969,959 to 970,783
SO0939
SO0940: SO0940 - transcriptional regulator-related protein (NCBI ptt file), at 971,225 to 971,968
SO0940
SO0941: SO0941 - hypothetical protein (NCBI ptt file), at 971,961 to 972,491
SO0941
SO0942: SO0942 - conserved hypothetical protein (NCBI ptt file), at 972,576 to 973,976
SO0942
Position (kb) 971
972 Strain fitness (log2 ratio) -1
0
1
2 at 970.268 kb on + strand, within SO0939 at 970.331 kb on + strand, within SO0939 at 970.429 kb on + strand, within SO0939 at 970.436 kb on - strand, within SO0939 at 970.436 kb on - strand, within SO0939 at 970.483 kb on - strand, within SO0939 at 970.500 kb on - strand, within SO0939 at 970.557 kb on + strand, within SO0939 at 970.580 kb on + strand, within SO0939 at 970.634 kb on - strand, within SO0939 at 970.685 kb on - strand, within SO0939 at 970.687 kb on + strand, within SO0939 at 970.751 kb on + strand at 970.751 kb on + strand at 970.759 kb on - strand at 970.768 kb on + strand at 970.983 kb on - strand at 970.983 kb on - strand at 971.105 kb on + strand at 971.105 kb on + strand at 971.114 kb on - strand at 971.141 kb on + strand at 971.184 kb on - strand at 971.312 kb on + strand, within SO0940 at 971.312 kb on + strand, within SO0940 at 971.320 kb on - strand, within SO0940 at 971.371 kb on + strand, within SO0940 at 971.421 kb on + strand, within SO0940 at 971.543 kb on - strand, within SO0940 at 971.557 kb on + strand, within SO0940 at 971.557 kb on + strand, within SO0940 at 971.576 kb on - strand, within SO0940 at 971.682 kb on + strand, within SO0940 at 971.700 kb on - strand, within SO0940 at 971.728 kb on + strand, within SO0940 at 971.760 kb on + strand, within SO0940 at 971.760 kb on + strand, within SO0940 at 971.768 kb on - strand, within SO0940 at 971.768 kb on - strand, within SO0940 at 971.772 kb on + strand, within SO0940 at 971.772 kb on + strand, within SO0940 at 971.779 kb on - strand, within SO0940 at 971.780 kb on - strand, within SO0940 at 971.940 kb on + strand at 971.942 kb on + strand at 971.951 kb on + strand at 972.176 kb on - strand, within SO0941 at 972.266 kb on - strand, within SO0941 at 972.324 kb on - strand, within SO0941 at 972.365 kb on - strand, within SO0941 at 972.388 kb on + strand, within SO0941 at 972.419 kb on + strand, within SO0941 at 972.424 kb on + strand, within SO0941 at 972.427 kb on - strand, within SO0941 at 972.706 kb on + strand at 972.730 kb on - strand, within SO0942 at 972.768 kb on + strand, within SO0942 at 972.768 kb on + strand, within SO0942 at 972.829 kb on + strand, within SO0942 at 972.829 kb on + strand, within SO0942 at 972.931 kb on - strand, within SO0942
Per-strain Table
Position Strand Gene LocusTag Fraction Survival in PBS at 4C, experiment2, 1 day remove 970,268 + SO0939 0.37 +0.4 970,331 + SO0939 0.45 +1.2 970,429 + SO0939 0.57 -0.2 970,436 - SO0939 0.58 +0.2 970,436 - SO0939 0.58 -0.3 970,483 - SO0939 0.64 +0.3 970,500 - SO0939 0.66 -0.0 970,557 + SO0939 0.72 -0.4 970,580 + SO0939 0.75 +0.0 970,634 - SO0939 0.82 -0.1 970,685 - SO0939 0.88 +0.7 970,687 + SO0939 0.88 +0.6 970,751 + +0.0 970,751 + +0.9 970,759 - -0.5 970,768 + +0.4 970,983 - -1.3 970,983 - +0.1 971,105 + -1.3 971,105 + -0.4 971,114 - -0.1 971,141 + -0.0 971,184 - -0.2 971,312 + SO0940 0.12 -0.4 971,312 + SO0940 0.12 -1.7 971,320 - SO0940 0.13 -0.7 971,371 + SO0940 0.20 -1.0 971,421 + SO0940 0.26 -0.6 971,543 - SO0940 0.43 -0.6 971,557 + SO0940 0.45 -0.0 971,557 + SO0940 0.45 -1.3 971,576 - SO0940 0.47 +0.2 971,682 + SO0940 0.61 -0.4 971,700 - SO0940 0.64 +0.1 971,728 + SO0940 0.68 -0.3 971,760 + SO0940 0.72 -0.2 971,760 + SO0940 0.72 -0.4 971,768 - SO0940 0.73 -0.9 971,768 - SO0940 0.73 -0.6 971,772 + SO0940 0.74 -0.4 971,772 + SO0940 0.74 +0.0 971,779 - SO0940 0.74 -1.7 971,780 - SO0940 0.75 +1.0 971,940 + +1.0 971,942 + -0.1 971,951 + +2.0 972,176 - SO0941 0.40 +0.2 972,266 - SO0941 0.57 -1.0 972,324 - SO0941 0.68 -0.1 972,365 - SO0941 0.76 +0.2 972,388 + SO0941 0.80 -0.2 972,419 + SO0941 0.86 -0.0 972,424 + SO0941 0.87 -0.3 972,427 - SO0941 0.88 +0.6 972,706 + -0.5 972,730 - SO0942 0.11 +0.2 972,768 + SO0942 0.14 -0.0 972,768 + SO0942 0.14 -0.5 972,829 + SO0942 0.18 +0.8 972,829 + SO0942 0.18 +0.3 972,931 - SO0942 0.25 +0.5
Or see this region's nucleotide sequence