Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003419

Experiment: RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM
3,845,403	-				+2.1
3,845,441	+				+1.3
3,845,441	+				+1.2
3,845,442	-				-0.2
3,845,442	-				+1.7
3,845,442	-				+1.8
3,845,442	-				+2.0
3,845,550	+				+1.4
3,845,550	+				-0.3
3,845,550	+				+0.4
3,845,550	+				+0.3
3,845,551	-				+1.7
3,845,551	-				-0.7
3,845,613	+		ABIE53_003418	0.13	-0.8
3,845,613	+		ABIE53_003418	0.13	-0.2
3,845,613	+		ABIE53_003418	0.13	-0.1
3,845,613	+		ABIE53_003418	0.13	+1.1
3,845,613	+		ABIE53_003418	0.13	-1.2
3,845,613	+		ABIE53_003418	0.13	-1.0
3,845,614	-		ABIE53_003418	0.13	+1.2
3,845,614	-		ABIE53_003418	0.13	+0.8
3,845,614	-		ABIE53_003418	0.13	-0.8
3,845,626	+		ABIE53_003418	0.15	-0.9
3,845,626	+		ABIE53_003418	0.15	+1.1
3,845,626	+		ABIE53_003418	0.15	-1.2
3,845,627	-		ABIE53_003418	0.15	+0.7
3,845,627	-		ABIE53_003418	0.15	-0.1
3,845,627	-		ABIE53_003418	0.15	-0.8
3,845,627	-		ABIE53_003418	0.15	-0.9
3,845,627	-		ABIE53_003418	0.15	-0.3
3,845,627	-		ABIE53_003418	0.15	-2.9
3,845,655	+		ABIE53_003418	0.19	-1.1
3,845,898	+		ABIE53_003418	0.56	-0.4
3,845,898	+		ABIE53_003418	0.56	-2.4
3,845,898	+		ABIE53_003418	0.56	+1.2
3,845,898	+		ABIE53_003418	0.56	-1.9
3,845,898	+		ABIE53_003418	0.56	-0.3
3,845,899	-		ABIE53_003418	0.56	+0.1
3,845,899	-		ABIE53_003418	0.56	-0.6
3,845,899	-		ABIE53_003418	0.56	+0.1
3,846,176	+				-0.8
3,846,177	-				-2.4
3,846,177	-				-0.3
3,846,226	+				+0.9
3,846,226	+				-0.1
3,846,226	+				-0.2
3,846,227	-				-0.2
3,846,227	-				+0.9
3,846,227	-				+1.4
3,846,227	-				+0.1
3,846,290	+				-0.2
3,846,290	+				+1.2
3,846,290	+				-0.3
3,846,290	+				+0.2
3,846,291	-				+0.7
3,846,291	-				+0.5
3,846,291	-				-0.7
3,846,291	-				+2.2
3,846,291	-				+1.2
3,846,291	-				+0.7
3,846,291	-				-1.1
3,846,389	-				-0.2
3,846,389	-				-0.1
3,846,656	+		ABIE53_003419	0.18	-1.0
3,846,656	+		ABIE53_003419	0.18	-0.6
3,846,656	+		ABIE53_003419	0.18	-0.5
3,846,656	+		ABIE53_003419	0.18	+1.7
3,846,657	-		ABIE53_003419	0.18	-0.3
3,846,657	-		ABIE53_003419	0.18	-0.1
3,846,657	-		ABIE53_003419	0.18	-0.7
3,846,657	-		ABIE53_003419	0.18	+0.7
3,846,772	+		ABIE53_003419	0.25	+0.7
3,846,773	-		ABIE53_003419	0.25	-0.1
3,846,773	-		ABIE53_003419	0.25	-2.9
3,846,773	-		ABIE53_003419	0.25	+0.1
3,846,773	-		ABIE53_003419	0.25	+1.2
3,846,823	+		ABIE53_003419	0.28	-1.3
3,846,823	+		ABIE53_003419	0.28	-0.6
3,846,824	-		ABIE53_003419	0.28	-2.3
3,846,824	-		ABIE53_003419	0.28	+0.1
3,846,824	-		ABIE53_003419	0.28	-0.4
3,846,824	-		ABIE53_003419	0.28	-0.7
3,846,825	+		ABIE53_003419	0.28	-0.7
3,846,825	+		ABIE53_003419	0.28	-1.2
3,846,825	+		ABIE53_003419	0.28	+1.8
3,846,825	+		ABIE53_003419	0.28	-2.6
3,846,871	+		ABIE53_003419	0.30	-1.1
3,846,872	-		ABIE53_003419	0.31	-0.7
3,846,872	-		ABIE53_003419	0.31	-1.2
3,846,872	-		ABIE53_003419	0.31	-0.0
3,846,872	-		ABIE53_003419	0.31	-0.0
3,846,872	-		ABIE53_003419	0.31	+0.9
3,846,872	-		ABIE53_003419	0.31	-0.8
3,846,872	-		ABIE53_003419	0.31	-1.0
3,846,872	-		ABIE53_003419	0.31	-3.7
3,846,872	-		ABIE53_003419	0.31	-0.5
3,846,988	+		ABIE53_003419	0.37	+0.2
3,846,988	+		ABIE53_003419	0.37	-1.3
3,847,045	+		ABIE53_003419	0.41	-1.0
3,847,045	+		ABIE53_003419	0.41	-0.3
3,847,045	+		ABIE53_003419	0.41	+0.7
3,847,046	-		ABIE53_003419	0.41	+0.7
3,847,046	-		ABIE53_003419	0.41	+1.1
3,847,046	-		ABIE53_003419	0.41	-0.4
3,847,046	-		ABIE53_003419	0.41	-1.0
3,847,072	+		ABIE53_003419	0.42	-0.9
3,847,072	+		ABIE53_003419	0.42	-1.9
3,847,072	+		ABIE53_003419	0.42	-1.1
3,847,073	-		ABIE53_003419	0.42	+0.2
3,847,073	-		ABIE53_003419	0.42	-0.5
3,847,073	-		ABIE53_003419	0.42	-1.3
3,847,073	-		ABIE53_003419	0.42	-0.5
3,847,073	-		ABIE53_003419	0.42	+0.7
3,847,276	+		ABIE53_003419	0.54	-0.9
3,847,277	-		ABIE53_003419	0.54	-0.5
3,847,615	+		ABIE53_003419	0.74	+4.0
3,847,615	+		ABIE53_003419	0.74	-0.6
3,847,615	+		ABIE53_003419	0.74	-0.5
3,847,615	+		ABIE53_003419	0.74	-0.4
3,847,616	-		ABIE53_003419	0.74	-1.1
3,847,616	-		ABIE53_003419	0.74	-0.3
3,847,616	-		ABIE53_003419	0.74	-1.2
3,847,616	-		ABIE53_003419	0.74	+1.2
3,847,616	-		ABIE53_003419	0.74	-0.1
3,847,616	-		ABIE53_003419	0.74	-0.3
3,847,616	-		ABIE53_003419	0.74	-0.7
3,847,616	-		ABIE53_003419	0.74	+0.0
3,847,616	-		ABIE53_003419	0.74	-1.1
3,847,849	+		ABIE53_003419	0.87	-0.7
3,847,849	+		ABIE53_003419	0.87	-1.9
3,847,849	+		ABIE53_003419	0.87	-2.1
3,847,849	+		ABIE53_003419	0.87	+1.2
3,847,849	+		ABIE53_003419	0.87	-2.0
3,847,849	+		ABIE53_003419	0.87	-0.3
3,847,849	+		ABIE53_003419	0.87	+0.1
3,847,849	+		ABIE53_003419	0.87	-0.1
3,847,850	-		ABIE53_003419	0.87	+1.0
3,847,850	-		ABIE53_003419	0.87	-0.9
3,847,850	-		ABIE53_003419	0.87	-0.6
3,847,850	-		ABIE53_003419	0.87	-2.0
3,847,850	-		ABIE53_003419	0.87	+0.1
3,847,850	-		ABIE53_003419	0.87	-0.7
3,847,876	+		ABIE53_003419	0.89	-0.3
3,847,876	+		ABIE53_003419	0.89	-0.3
3,847,876	+		ABIE53_003419	0.89	-0.8
3,847,876	+		ABIE53_003419	0.89	-1.7
3,847,876	+		ABIE53_003419	0.89	+0.7
3,847,876	+		ABIE53_003419	0.89	+0.5
3,847,876	+		ABIE53_003419	0.89	-0.7
3,847,876	+		ABIE53_003419	0.89	-1.1
3,847,876	+		ABIE53_003419	0.89	-0.6
3,847,876	+		ABIE53_003419	0.89	-0.5
3,847,876	+		ABIE53_003419	0.89	-1.5
3,847,876	+		ABIE53_003419	0.89	-0.2
3,847,876	+		ABIE53_003419	0.89	-1.5
3,847,876	+		ABIE53_003419	0.89	+0.7
3,847,876	+		ABIE53_003419	0.89	-1.8
3,847,876	+		ABIE53_003419	0.89	+0.2
3,847,876	+		ABIE53_003419	0.89	-0.7
3,847,876	+		ABIE53_003419	0.89	-0.6
3,847,877	-		ABIE53_003419	0.89	+0.1
3,847,877	-		ABIE53_003419	0.89	+1.9
3,847,877	-		ABIE53_003419	0.89	+0.1
3,847,877	-		ABIE53_003419	0.89	-2.0
3,847,877	-		ABIE53_003419	0.89	-1.8
3,847,877	-		ABIE53_003419	0.89	-0.9
3,847,877	-		ABIE53_003419	0.89	-0.5
3,847,877	-		ABIE53_003419	0.89	-1.1
3,847,877	-		ABIE53_003419	0.89	+0.7
3,847,877	-		ABIE53_003419	0.89	-0.1
3,847,877	-		ABIE53_003419	0.89	-0.9
3,847,877	-		ABIE53_003419	0.89	+0.8
3,847,877	-		ABIE53_003419	0.89	+2.7
3,847,877	-		ABIE53_003419	0.89	-0.2
3,847,877	-		ABIE53_003419	0.89	-1.0
3,847,877	-		ABIE53_003419	0.89	-1.1
3,847,877	-		ABIE53_003419	0.89	-2.0
3,847,954	+				-1.1
3,847,955	-				-0.9
3,847,955	-				-0.4
3,847,955	-				-0.8
3,847,955	-				-0.3
3,848,078	+				-0.3
3,848,113	+				+0.1
3,848,113	+				+0.7
3,848,113	+				-0.3
3,848,114	-				+1.7
3,848,114	-				+1.7
3,848,114	-				+0.2
3,848,114	-				-0.4
3,848,158	-				-1.8
3,848,281	+				-1.1
3,848,281	+				+0.4
3,848,282	-				-0.3
3,848,282	-				-0.8
3,848,282	-				-0.2
3,848,282	-				+0.3
3,848,282	-				-1.3
3,848,282	-				+0.1
3,848,282	-				-0.3
3,848,333	+		ABIE53_003420	0.11	+0.1
3,848,334	-		ABIE53_003420	0.11	+1.2
3,848,334	-		ABIE53_003420	0.11	-0.3
3,848,334	-		ABIE53_003420	0.11	-0.7
3,848,335	+		ABIE53_003420	0.11	-0.1
3,848,335	+		ABIE53_003420	0.11	+0.9
3,848,335	+		ABIE53_003420	0.11	-1.1
3,848,335	+		ABIE53_003420	0.11	+0.2
3,848,335	+		ABIE53_003420	0.11	-1.7
3,848,335	+		ABIE53_003420	0.11	+1.7
3,848,335	+		ABIE53_003420	0.11	+1.2
3,848,335	+		ABIE53_003420	0.11	-1.5
3,848,335	+		ABIE53_003420	0.11	+0.5
3,848,336	-		ABIE53_003420	0.12	-0.1
3,848,336	-		ABIE53_003420	0.12	-0.3
3,848,336	-		ABIE53_003420	0.12	-0.3
3,848,336	-		ABIE53_003420	0.12	+0.1
3,848,336	-		ABIE53_003420	0.12	-0.1
3,848,336	-		ABIE53_003420	0.12	-1.7
3,848,336	-		ABIE53_003420	0.12	+1.2
3,848,336	-		ABIE53_003420	0.12	+1.1
3,848,336	-		ABIE53_003420	0.12	+0.0
3,848,336	-		ABIE53_003420	0.12	-1.2
3,848,423	+		ABIE53_003420	0.21	+0.1
3,848,423	+		ABIE53_003420	0.21	-0.5
3,848,436	-		ABIE53_003420	0.22	-0.8
3,848,436	-		ABIE53_003420	0.22	+1.2
3,848,436	-		ABIE53_003420	0.22	-1.1
3,848,436	-		ABIE53_003420	0.22	+2.3
3,848,436	-		ABIE53_003420	0.22	-0.4
3,848,436	-		ABIE53_003420	0.22	-0.3
3,848,436	-		ABIE53_003420	0.22	-0.6
3,848,513	+		ABIE53_003420	0.30	+0.0
3,848,513	+		ABIE53_003420	0.30	+0.0
3,848,513	+		ABIE53_003420	0.30	+0.7
3,848,513	+		ABIE53_003420	0.30	+0.2
3,848,513	+		ABIE53_003420	0.30	-0.5
3,848,514	-		ABIE53_003420	0.30	+0.6
3,848,514	-		ABIE53_003420	0.30	+1.8
3,848,514	-		ABIE53_003420	0.30	-0.1
3,848,514	-		ABIE53_003420	0.30	-0.8
3,848,516	+		ABIE53_003420	0.30	-0.8
3,848,516	+		ABIE53_003420	0.30	+1.1
3,848,516	+		ABIE53_003420	0.30	-0.7
3,848,516	+		ABIE53_003420	0.30	+1.2
3,848,516	+		ABIE53_003420	0.30	+0.9
3,848,516	+		ABIE53_003420	0.30	+1.1
3,848,516	+		ABIE53_003420	0.30	-0.3
3,848,516	+		ABIE53_003420	0.30	+0.7
3,848,516	+		ABIE53_003420	0.30	-0.8
3,848,516	+		ABIE53_003420	0.30	-0.6
3,848,516	+		ABIE53_003420	0.30	+0.7
3,848,517	-		ABIE53_003420	0.30	-0.2
3,848,517	-		ABIE53_003420	0.30	+0.9
3,848,517	-		ABIE53_003420	0.30	-0.7
3,848,517	-		ABIE53_003420	0.30	-2.2
3,848,517	-		ABIE53_003420	0.30	-0.3
3,848,517	-		ABIE53_003420	0.30	-0.3
3,848,517	-		ABIE53_003420	0.30	+0.7
3,848,570	+		ABIE53_003420	0.36	-0.9
3,848,571	+		ABIE53_003420	0.36	-0.1
3,848,571	+		ABIE53_003420	0.36	+0.8
3,848,571	+		ABIE53_003420	0.36	+0.4
3,848,571	+		ABIE53_003420	0.36	+0.2
3,848,571	+		ABIE53_003420	0.36	-0.5
3,848,571	+		ABIE53_003420	0.36	+2.1
3,848,571	+		ABIE53_003420	0.36	-0.3
3,848,572	-		ABIE53_003420	0.36	-0.8
3,848,572	-		ABIE53_003420	0.36	+0.1
3,848,572	-		ABIE53_003420	0.36	-0.8
3,848,572	-		ABIE53_003420	0.36	-0.7
3,848,572	-		ABIE53_003420	0.36	+0.7
3,848,572	-		ABIE53_003420	0.36	-0.5
3,848,572	-		ABIE53_003420	0.36	-0.3
3,848,627	+		ABIE53_003420	0.42	+0.1
3,848,627	+		ABIE53_003420	0.42	-0.6
3,848,627	+		ABIE53_003420	0.42	+2.7
3,848,627	+		ABIE53_003420	0.42	-2.4
3,848,628	-		ABIE53_003420	0.42	+1.9
3,848,628	-		ABIE53_003420	0.42	+1.0
3,848,628	-		ABIE53_003420	0.42	+0.1
3,848,628	-		ABIE53_003420	0.42	-0.5
3,848,740	+		ABIE53_003420	0.53	+0.2
3,848,740	+		ABIE53_003420	0.53	-1.0
3,848,740	+		ABIE53_003420	0.53	-1.1
3,848,740	+		ABIE53_003420	0.53	-1.7
3,848,740	+		ABIE53_003420	0.53	+0.2
3,848,740	+		ABIE53_003420	0.53	-0.1
3,848,740	+		ABIE53_003420	0.53	+0.2
3,848,740	+		ABIE53_003420	0.53	-1.0
3,848,740	+		ABIE53_003420	0.53	-0.2
3,848,740	+		ABIE53_003420	0.53	+0.7
3,848,740	+		ABIE53_003420	0.53	+0.3
3,848,741	-		ABIE53_003420	0.54	-0.3
3,848,741	-		ABIE53_003420	0.54	-2.3
3,848,741	-		ABIE53_003420	0.54	-0.1
3,848,741	-		ABIE53_003420	0.54	-1.3
3,848,741	-		ABIE53_003420	0.54	-0.7
3,848,741	-		ABIE53_003420	0.54	+0.1
3,848,786	+		ABIE53_003420	0.58	-0.3
3,848,786	+		ABIE53_003420	0.58	-0.7
3,848,786	+		ABIE53_003420	0.58	+0.2
3,848,786	+		ABIE53_003420	0.58	+1.0
3,848,787	-		ABIE53_003420	0.58	+0.3
3,848,787	-		ABIE53_003420	0.58	-0.7
3,848,787	-		ABIE53_003420	0.58	-0.1
3,848,787	-		ABIE53_003420	0.58	+0.7
3,848,840	+		ABIE53_003420	0.64	+0.3
3,848,840	+		ABIE53_003420	0.64	+0.2
3,848,840	+		ABIE53_003420	0.64	-0.1
3,848,840	+		ABIE53_003420	0.64	-0.9
3,848,840	+		ABIE53_003420	0.64	+0.6
3,848,841	-		ABIE53_003420	0.64	+0.2
3,848,841	-		ABIE53_003420	0.64	+0.7
3,848,841	-		ABIE53_003420	0.64	+0.8
3,848,841	-		ABIE53_003420	0.64	-0.6
3,848,841	-		ABIE53_003420	0.64	-0.5
3,848,841	-		ABIE53_003420	0.64	+1.1
3,848,841	-		ABIE53_003420	0.64	-0.1
3,848,841	-		ABIE53_003420	0.64	+0.8
3,848,842	+		ABIE53_003420	0.64	-0.2
3,848,843	-		ABIE53_003420	0.64	+0.1
3,848,843	-		ABIE53_003420	0.64	+0.1
3,848,843	-		ABIE53_003420	0.64	+0.4
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