Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4436

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
5,841,983	-		BT4434	0.85	-1.1
5,841,988	+		BT4434	0.87	-1.1
5,841,989	-		BT4434	0.87	-1.1
5,842,023	+				-1.1
5,842,024	-				-1.3
5,842,025	+				-3.0
5,842,142	-				-1.3
5,842,195	+		BT4435	0.12	-0.5
5,842,196	-		BT4435	0.12	-0.4
5,842,212	-		BT4435	0.14	+0.5
5,842,221	-		BT4435	0.16	+0.3
5,842,351	-		BT4435	0.34	-1.2
5,842,460	+		BT4435	0.49	-0.5
5,842,461	-		BT4435	0.50	-0.7
5,842,483	+		BT4435	0.53	-0.7
5,842,593	+		BT4435	0.68	-1.2
5,842,594	-		BT4435	0.68	+0.8
5,842,607	-		BT4435	0.70	-3.5
5,842,627	-		BT4435	0.73	-0.9
5,842,645	-		BT4435	0.76	+1.9
5,842,645	-		BT4435	0.76	-1.6
5,842,661	+		BT4435	0.78	-0.4
5,842,666	-		BT4435	0.79	+0.6
5,842,701	-		BT4435	0.83	-1.2
5,842,701	-		BT4435	0.83	-0.1
5,842,704	-		BT4435	0.84	-0.2
5,842,704	-		BT4435	0.84	-0.2
5,842,710	+		BT4435	0.85	+0.6
5,842,815	+				+0.0
5,842,836	-				-1.3
5,842,852	-				-0.8
5,842,852	-				-2.1
5,842,885	+				-0.3
5,842,964	+				+0.1
5,842,964	+				+0.9
5,842,964	+				-0.3
5,842,989	+				-1.3
5,843,062	+		BT4436	0.12	-1.5
5,843,063	-		BT4436	0.12	-2.5
5,843,248	-		BT4436	0.39	-0.5
5,843,267	+		BT4436	0.41	-1.6
5,843,267	+		BT4436	0.41	-0.7
5,843,267	+		BT4436	0.41	-1.0
5,843,267	+		BT4436	0.41	+0.9
5,843,344	+		BT4436	0.52	-0.1
5,843,353	+		BT4436	0.53	-1.1
5,843,354	-		BT4436	0.54	-3.1
5,843,377	+		BT4436	0.57	+1.1
5,843,378	-		BT4436	0.57	-1.3
5,843,378	-		BT4436	0.57	-0.7
5,843,399	+		BT4436	0.60	-0.3
5,843,400	-		BT4436	0.60	-2.0
5,843,421	+		BT4436	0.63	-0.6
5,843,435	-		BT4436	0.65	-1.5
5,843,525	+		BT4436	0.78	-1.8
5,843,526	-		BT4436	0.78	+0.0
5,843,548	+		BT4436	0.81	-1.6
5,843,554	+		BT4436	0.82	-1.0
5,843,555	-		BT4436	0.82	-1.5
5,843,555	-		BT4436	0.82	-1.2
5,843,557	+		BT4436	0.82	-0.5
5,843,566	+		BT4436	0.84	+0.3
5,843,603	+		BT4436	0.89	-2.3
5,843,632	+				-0.8
5,843,666	-				-0.1
5,843,685	+				-0.5
5,843,707	+				-1.3
5,843,712	+				-1.5
5,843,713	-				+0.4
5,843,733	+				-0.5
5,843,734	-				-1.7
5,843,810	-				+1.9
5,843,841	-				-2.2
5,843,895	-				-0.3
5,843,898	+				-1.0
5,843,917	+				-0.1
5,844,016	+		BT4437	0.17	-2.2
5,844,017	-		BT4437	0.17	-1.8
5,844,020	+		BT4437	0.17	-1.5
5,844,020	+		BT4437	0.17	-0.6
5,844,041	+		BT4437	0.19	-1.5
5,844,042	-		BT4437	0.19	-0.7
5,844,043	+		BT4437	0.19	-0.1
5,844,044	-		BT4437	0.19	-1.5
5,844,052	+		BT4437	0.20	-1.9
5,844,066	-		BT4437	0.21	+0.1
5,844,220	-		BT4437	0.34	-0.8
5,844,220	-		BT4437	0.34	-2.0
5,844,223	+		BT4437	0.34	-2.2
5,844,224	-		BT4437	0.34	-1.6
5,844,236	+		BT4437	0.35	-0.4
5,844,237	-		BT4437	0.35	-1.3
5,844,237	-		BT4437	0.35	-0.4
5,844,237	-		BT4437	0.35	-1.7
5,844,241	-		BT4437	0.36	-1.4
5,844,264	+		BT4437	0.38	-0.5
5,844,276	-		BT4437	0.39	-0.5
5,844,321	+		BT4437	0.42	-2.9
5,844,409	-		BT4437	0.49	-1.4
5,844,409	-		BT4437	0.49	-0.5
5,844,410	+		BT4437	0.50	-0.7
5,844,413	-		BT4437	0.50	-2.1
5,844,456	+		BT4437	0.53	-2.5
5,844,464	-		BT4437	0.54	+0.8
5,844,533	+		BT4437	0.60	+1.0