Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4434

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
5,840,650	-				+0.5
5,840,680	-				+0.0
5,840,680	-				-2.1
5,840,683	-				+1.3
5,840,719	-				-1.5
5,840,871	-				-0.7
5,840,946	+				-2.0
5,840,953	-				-0.4
5,840,967	-				-0.0
5,841,062	-		BT4433	0.21	-1.5
5,841,080	+		BT4433	0.25	+0.9
5,841,083	-		BT4433	0.26	-0.0
5,841,083	-		BT4433	0.26	+1.1
5,841,139	+		BT4433	0.38	-0.8
5,841,176	+		BT4433	0.46	-0.4
5,841,177	-		BT4433	0.47	+0.8
5,841,224	-		BT4433	0.57	-0.6
5,841,333	-		BT4433	0.81	-1.3
5,841,344	-		BT4433	0.84	-1.6
5,841,552	-				-0.6
5,841,555	-				+0.7
5,841,647	+		BT4434	0.13	-1.0
5,841,710	+		BT4434	0.26	-1.2
5,841,740	-		BT4434	0.33	-0.7
5,841,769	-		BT4434	0.39	-1.3
5,841,934	+		BT4434	0.75	-2.2
5,841,945	+		BT4434	0.77	-1.6
5,841,983	-		BT4434	0.85	-1.1
5,841,988	+		BT4434	0.87	-1.1
5,841,989	-		BT4434	0.87	-1.1
5,842,023	+				-1.1
5,842,024	-				-1.3
5,842,025	+				-3.0
5,842,142	-				-1.3
5,842,195	+		BT4435	0.12	-0.5
5,842,196	-		BT4435	0.12	-0.4
5,842,212	-		BT4435	0.14	+0.5
5,842,221	-		BT4435	0.16	+0.3
5,842,351	-		BT4435	0.34	-1.2
5,842,460	+		BT4435	0.49	-0.5
5,842,461	-		BT4435	0.50	-0.7
5,842,483	+		BT4435	0.53	-0.7
5,842,593	+		BT4435	0.68	-1.2
5,842,594	-		BT4435	0.68	+0.8
5,842,607	-		BT4435	0.70	-3.5
5,842,627	-		BT4435	0.73	-0.9
5,842,645	-		BT4435	0.76	+1.9
5,842,645	-		BT4435	0.76	-1.6
5,842,661	+		BT4435	0.78	-0.4
5,842,666	-		BT4435	0.79	+0.6
5,842,701	-		BT4435	0.83	-1.2
5,842,701	-		BT4435	0.83	-0.1
5,842,704	-		BT4435	0.84	-0.2
5,842,704	-		BT4435	0.84	-0.2
5,842,710	+		BT4435	0.85	+0.6
5,842,815	+				+0.0
5,842,836	-				-1.3
5,842,852	-				-0.8
5,842,852	-				-2.1
5,842,885	+				-0.3
5,842,964	+				+0.1
5,842,964	+				+0.9
5,842,964	+				-0.3
5,842,989	+				-1.3