Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2196

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
2,756,352	-		BT2195	0.45	-0.3
2,756,468	+		BT2195	0.52	-0.5
2,756,470	-		BT2195	0.52	-0.6
2,756,509	+		BT2195	0.54	-0.8
2,756,526	+		BT2195	0.55	-3.2
2,756,798	+		BT2195	0.71	-1.3
2,756,798	+		BT2195	0.71	-2.6
2,756,828	-		BT2195	0.73	+0.3
2,756,833	+		BT2195	0.73	+1.5
2,756,834	-		BT2195	0.73	+0.6
2,756,834	-		BT2195	0.73	-1.0
2,756,879	+		BT2195	0.76	-0.6
2,756,880	-		BT2195	0.76	-0.9
2,756,947	+		BT2195	0.80	-0.4
2,756,947	+		BT2195	0.80	-1.5
2,756,948	-		BT2195	0.80	-1.1
2,756,948	-		BT2195	0.80	-0.1
2,757,027	+		BT2195	0.84	-0.6
2,757,027	+		BT2195	0.84	+0.0
2,757,080	-		BT2195	0.87	-1.3
2,757,142	+				-0.2
2,757,143	-				-1.8
2,757,143	-				-0.1
2,757,290	+				-0.7
2,757,290	+				-3.1
2,757,290	+				-1.6
2,757,291	-				-0.3
2,757,294	+				+0.4
2,757,295	-				-0.1
2,757,343	-				+1.0
2,757,360	-				+0.6
2,757,361	+				-2.1
2,757,362	-				-1.5
2,757,375	+				-0.2
2,757,380	+				+0.9
2,757,381	-				-1.6
2,757,548	+				-1.8
2,757,548	+				-0.5
2,757,548	+				-1.7
2,757,548	+				-0.2
2,757,549	-				-0.5
2,757,549	-				-0.2
2,757,553	-				+0.3
2,757,602	-				-0.6
2,757,919	+		BT2196	0.17	-0.6
2,757,920	-		BT2196	0.18	-2.4
2,757,987	+		BT2196	0.20	-2.3
2,757,988	-		BT2196	0.20	-1.2
2,758,007	+		BT2196	0.20	-1.7
2,758,057	-		BT2196	0.22	+1.2
2,758,081	+		BT2196	0.22	-0.9
2,758,180	-		BT2196	0.25	-2.8
2,758,195	-		BT2196	0.26	-0.3
2,758,224	+		BT2196	0.27	-1.0
2,758,229	+		BT2196	0.27	-1.2
2,758,229	+		BT2196	0.27	-1.7
2,758,229	+		BT2196	0.27	-0.5
2,758,229	+		BT2196	0.27	+0.5
2,758,230	-		BT2196	0.27	-0.3
2,758,230	-		BT2196	0.27	-2.2
2,758,289	+		BT2196	0.28	-1.7
2,758,401	+		BT2196	0.32	+0.3
2,758,401	+		BT2196	0.32	-2.6
2,758,402	-		BT2196	0.32	-1.6
2,758,410	+		BT2196	0.32	-0.9
2,758,414	+		BT2196	0.32	-1.3
2,758,458	+		BT2196	0.34	-1.9
2,758,458	+		BT2196	0.34	-0.3
2,758,458	+		BT2196	0.34	+0.2
2,758,460	+		BT2196	0.34	-1.5
2,758,467	-		BT2196	0.34	+0.8
2,758,474	-		BT2196	0.34	-1.8
2,758,656	+		BT2196	0.39	-0.2
2,758,656	+		BT2196	0.39	-0.4
2,758,658	+		BT2196	0.39	-0.4
2,758,674	+		BT2196	0.40	-1.5
2,758,674	+		BT2196	0.40	+1.2
2,758,675	-		BT2196	0.40	-0.9
2,758,700	-		BT2196	0.41	+2.1
2,758,775	-		BT2196	0.43	-0.4
2,758,783	-		BT2196	0.43	-0.5
2,758,786	-		BT2196	0.43	-1.8
2,758,810	-		BT2196	0.44	-1.7
2,758,855	-		BT2196	0.45	-0.7
2,758,860	+		BT2196	0.45	-1.0
2,758,883	+		BT2196	0.46	+2.0
2,759,006	+		BT2196	0.50	-0.6
2,759,006	+		BT2196	0.50	-1.0
2,759,007	-		BT2196	0.50	-1.6
2,759,009	-		BT2196	0.50	+1.0
2,759,110	+				-0.3
2,759,166	-		BT2196	0.55	-0.8
2,759,192	-		BT2196	0.55	-0.0
2,759,192	-		BT2196	0.55	-1.8
2,759,192	-		BT2196	0.55	+1.0
2,759,195	+		BT2196	0.55	-0.6
2,759,235	+		BT2196	0.57	-0.6
2,759,244	+		BT2196	0.57	-0.8
2,759,336	+		BT2196	0.60	-0.7
2,759,435	+		BT2196	0.63	-1.2
2,759,527	-		BT2196	0.65	-0.8
2,759,529	+		BT2196	0.65	-1.3
2,759,609	+		BT2196	0.68	-1.7
2,759,610	-		BT2196	0.68	-3.1
2,759,610	-		BT2196	0.68	-0.2
2,759,612	+		BT2196	0.68	-2.0
2,759,712	+		BT2196	0.71	-2.1
2,759,724	-		BT2196	0.71	-0.6
2,759,771	-		BT2196	0.73	-0.8
2,759,774	-		BT2196	0.73	-1.9
2,759,829	+		BT2196	0.74	+1.7
2,759,835	+		BT2196	0.74	-2.0
2,759,836	-		BT2196	0.74	-3.2
2,760,021	+		BT2196	0.80	-0.3
2,760,051	+		BT2196	0.81	-1.7
2,760,051	+		BT2196	0.81	-2.0
2,760,067	+		BT2196	0.81	+0.6
2,760,068	-		BT2196	0.81	-0.5
2,760,068	-		BT2196	0.81	-1.8
2,760,105	-		BT2196	0.82	-1.3
2,760,105	-		BT2196	0.82	+0.1
2,760,186	+		BT2196	0.85	-1.0
2,760,209	+		BT2196	0.86	+1.6
2,760,220	+		BT2196	0.86	-1.5
2,760,283	-		BT2196	0.88	-0.6
2,760,359	-				-0.8
2,760,362	-				-0.3
2,760,370	-				-1.0
2,760,431	+				-0.0
2,760,432	-				+0.4
2,760,639	-				-1.0
2,760,654	+				-0.8
2,760,715	+				-0.0
2,760,723	+				-0.7
2,760,728	+				-0.7
2,760,758	+				-0.2
2,760,758	+				+0.9
2,760,765	-				+0.1
2,760,809	-				-0.0
2,760,887	+				+0.2
2,760,894	-				-0.8
2,760,894	-				-0.0
2,760,894	-				+1.5
2,760,896	-				-2.5
2,760,919	+				-1.2
2,760,993	+		BT2197	0.11	-0.6
2,761,044	+		BT2197	0.16	-1.2
2,761,045	-		BT2197	0.16	-0.2
2,761,050	-		BT2197	0.17	+0.9
2,761,123	+		BT2197	0.24	-1.7
2,761,177	+		BT2197	0.30	-0.4
2,761,230	+		BT2197	0.35	-1.1
2,761,243	-		BT2197	0.37	-0.0
2,761,278	+		BT2197	0.40	-1.0
2,761,283	+		BT2197	0.41	-1.6
2,761,284	-		BT2197	0.41	-0.5
2,761,290	-		BT2197	0.41	+1.5
2,761,290	-		BT2197	0.41	-0.6
2,761,318	+		BT2197	0.44	-1.3
2,761,318	+		BT2197	0.44	+0.4
2,761,318	+		BT2197	0.44	-1.7
2,761,319	-		BT2197	0.44	+0.2
2,761,325	+		BT2197	0.45	+0.0
2,761,399	+				+0.4
2,761,470	+		BT2197	0.60	-0.3
2,761,554	+		BT2197	0.69	-0.6
2,761,554	+		BT2197	0.69	+0.7
2,761,605	+		BT2197	0.74	+0.2
2,761,606	-		BT2197	0.74	+1.0