Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1884

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
2,370,815	+		BT1883	0.41	-1.5
2,370,816	-		BT1883	0.42	-0.5
2,370,818	-		BT1883	0.42	-3.3
2,370,818	-		BT1883	0.42	+1.7
2,370,824	+		BT1883	0.42	-1.1
2,370,825	-		BT1883	0.42	-0.9
2,370,876	-		BT1883	0.46	+0.9
2,371,011	-		BT1883	0.57	-0.5
2,371,119	+		BT1883	0.66	-1.6
2,371,198	-		BT1883	0.73	-2.1
2,371,200	-		BT1883	0.73	-0.3
2,371,229	+		BT1883	0.75	-0.6
2,371,230	-		BT1883	0.75	-0.6
2,371,230	-		BT1883	0.75	-1.0
2,371,231	+		BT1883	0.75	+0.9
2,371,231	+		BT1883	0.75	+0.1
2,371,240	-		BT1883	0.76	-1.3
2,371,254	-		BT1883	0.77	-1.3
2,371,304	+		BT1883	0.81	-0.9
2,371,309	+		BT1883	0.82	-1.4
2,371,310	-		BT1883	0.82	+0.4
2,371,436	+				+0.8
2,371,452	+				+0.3
2,371,452	+				-1.1
2,371,555	+				-0.7
2,371,589	+				+0.9
2,371,590	-				-1.3
2,371,598	+				+0.7
2,371,683	-				-0.5
2,371,686	-				-1.0
2,371,748	+				-0.9
2,371,887	+		BT1884	0.17	-1.7
2,371,892	+		BT1884	0.18	+0.5
2,371,892	+		BT1884	0.18	+0.5
2,371,893	-		BT1884	0.18	-0.4
2,371,895	+		BT1884	0.19	+4.8
2,371,910	+		BT1884	0.22	-0.3
2,371,940	-		BT1884	0.29	-0.4
2,371,940	-		BT1884	0.29	-0.7
2,371,944	-		BT1884	0.29	-0.1
2,372,058	+		BT1884	0.54	-1.1
2,372,073	+		BT1884	0.58	-1.1
2,372,137	+		BT1884	0.71	+0.0
2,372,138	-		BT1884	0.72	-0.7
2,372,147	+		BT1884	0.74	-0.1
2,372,248	-				-0.1
2,372,277	-				-0.7
2,372,280	+				+2.1
2,372,281	-				-0.9
2,372,288	-				-1.3
2,372,412	-				+2.0
2,372,420	+				-1.6
2,372,420	+				-1.2
2,372,421	-				-0.9
2,372,464	+		BT1885	0.13	+1.1
2,372,464	+		BT1885	0.13	-0.1
2,372,465	-		BT1885	0.13	-1.3
2,372,491	+		BT1885	0.15	-0.5
2,372,627	+		BT1885	0.27	+0.8
2,372,681	+		BT1885	0.32	-1.8
2,372,702	+		BT1885	0.34	+1.3
2,372,707	-		BT1885	0.34	-0.1
2,372,792	+		BT1885	0.42	-2.0
2,372,792	+		BT1885	0.42	-0.7
2,372,800	-		BT1885	0.42	-0.1
2,372,819	+		BT1885	0.44	-0.6
2,372,820	-		BT1885	0.44	+1.3
2,372,939	+		BT1885	0.55	-1.1
2,372,952	-		BT1885	0.56	-0.7
2,372,952	-		BT1885	0.56	+0.1
2,373,015	+		BT1885	0.62	-0.4
2,373,017	+		BT1885	0.62	+0.5
2,373,146	+		BT1885	0.73	-0.1
2,373,149	-		BT1885	0.74	-1.1
2,373,267	+		BT1885	0.84	+0.3