Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003376

Experiment: RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM
3,797,792	+		ABIE53_003375	0.47	+0.0
3,797,793	-		ABIE53_003375	0.47	+0.6
3,797,793	-		ABIE53_003375	0.47	+0.6
3,797,793	-		ABIE53_003375	0.47	-0.5
3,797,816	+		ABIE53_003375	0.48	-0.9
3,797,816	+		ABIE53_003375	0.48	+0.6
3,797,816	+		ABIE53_003375	0.48	+0.6
3,797,817	-		ABIE53_003375	0.48	+0.2
3,797,825	+		ABIE53_003375	0.49	-0.4
3,797,825	+		ABIE53_003375	0.49	+0.6
3,797,825	+		ABIE53_003375	0.49	-0.1
3,797,826	-		ABIE53_003375	0.49	+1.6
3,798,125	+		ABIE53_003375	0.71	+0.3
3,798,125	+		ABIE53_003375	0.71	-0.4
3,798,126	-		ABIE53_003375	0.71	+1.5
3,798,126	-		ABIE53_003375	0.71	+1.5
3,798,126	-		ABIE53_003375	0.71	+1.2
3,798,126	-		ABIE53_003375	0.71	+1.4
3,798,126	-		ABIE53_003375	0.71	+1.2
3,798,126	-		ABIE53_003375	0.71	+0.6
3,798,126	-		ABIE53_003375	0.71	+1.3
3,798,175	+		ABIE53_003375	0.75	+3.2
3,798,176	-		ABIE53_003375	0.75	-0.3
3,798,200	+		ABIE53_003375	0.77	-1.2
3,798,261	+		ABIE53_003375	0.81	+3.6
3,798,262	-		ABIE53_003375	0.81	-1.9
3,798,262	-		ABIE53_003375	0.81	+3.2
3,798,323	+		ABIE53_003375	0.86	-0.4
3,798,323	+		ABIE53_003375	0.86	-0.7
3,798,323	+		ABIE53_003375	0.86	+1.1
3,798,324	-		ABIE53_003375	0.86	+1.2
3,798,324	-		ABIE53_003375	0.86	-1.5
3,798,324	-		ABIE53_003375	0.86	+1.1
3,798,345	-		ABIE53_003375	0.87	-0.4
3,798,345	-		ABIE53_003375	0.87	+0.5
3,798,345	-		ABIE53_003375	0.87	+0.0
3,798,358	+		ABIE53_003375	0.88	-0.1
3,798,358	+		ABIE53_003375	0.88	+0.2
3,798,358	+		ABIE53_003375	0.88	-0.9
3,798,359	-		ABIE53_003375	0.88	-0.5
3,798,406	-				-1.4
3,798,406	-				+0.6
3,798,406	-				+0.3
3,798,416	+				-1.5
3,798,455	-				-0.2
3,798,455	-				+2.6
3,798,455	-				+0.0
3,798,519	+				+0.2
3,798,519	+				-0.2
3,798,519	+				+0.1
3,798,519	+				+0.6
3,798,520	-				-0.7
3,798,520	-				+1.0
3,798,520	-				+0.4
3,798,520	-				+0.2
3,798,520	-				+0.0
3,798,520	-				+0.1
3,798,520	-				+0.6
3,798,520	-				+0.0
3,798,520	-				+0.2
3,798,520	-				-0.4
3,798,836	+		ABIE53_003376	0.13	-1.2
3,798,836	+		ABIE53_003376	0.13	-1.2
3,798,836	+		ABIE53_003376	0.13	-1.0
3,798,836	+		ABIE53_003376	0.13	+0.5
3,798,836	+		ABIE53_003376	0.13	+0.1
3,798,836	+		ABIE53_003376	0.13	-1.5
3,798,837	-		ABIE53_003376	0.13	+0.3
3,798,837	-		ABIE53_003376	0.13	+0.3
3,798,837	-		ABIE53_003376	0.13	+1.2
3,798,837	-		ABIE53_003376	0.13	+0.1
3,798,837	-		ABIE53_003376	0.13	-0.7
3,798,837	-		ABIE53_003376	0.13	+0.8
3,798,837	-		ABIE53_003376	0.13	+0.2
3,798,863	+		ABIE53_003376	0.18	+0.3
3,798,864	-		ABIE53_003376	0.18	+0.7
3,798,864	-		ABIE53_003376	0.18	+0.1
3,798,864	-		ABIE53_003376	0.18	+0.7
3,798,875	+		ABIE53_003376	0.20	-0.4
3,798,875	+		ABIE53_003376	0.20	+2.6
3,798,875	+		ABIE53_003376	0.20	+0.7
3,798,875	+		ABIE53_003376	0.20	-0.9
3,798,875	+		ABIE53_003376	0.20	+1.5
3,798,875	+		ABIE53_003376	0.20	+0.5
3,798,876	-		ABIE53_003376	0.21	+0.1
3,798,876	-		ABIE53_003376	0.21	+1.3
3,798,876	-		ABIE53_003376	0.21	+0.3
3,798,893	+		ABIE53_003376	0.24	+0.0
3,798,893	+		ABIE53_003376	0.24	+0.1
3,798,893	+		ABIE53_003376	0.24	-1.3
3,798,893	+		ABIE53_003376	0.24	-0.2
3,798,894	-		ABIE53_003376	0.24	-2.1
3,798,894	-		ABIE53_003376	0.24	+0.3
3,798,894	-		ABIE53_003376	0.24	+0.1
3,798,894	-		ABIE53_003376	0.24	-1.2
3,798,894	-		ABIE53_003376	0.24	+0.2
3,799,023	-		ABIE53_003376	0.47	-0.6
3,799,023	-		ABIE53_003376	0.47	+0.6
3,799,041	+		ABIE53_003376	0.51	-0.7
3,799,042	-		ABIE53_003376	0.51	-0.1
3,799,042	-		ABIE53_003376	0.51	-2.1
3,799,042	-		ABIE53_003376	0.51	+0.0
3,799,042	-		ABIE53_003376	0.51	+0.4
3,799,042	-		ABIE53_003376	0.51	-0.5
3,799,103	+		ABIE53_003376	0.62	-0.3
3,799,103	+		ABIE53_003376	0.62	+1.0
3,799,103	+		ABIE53_003376	0.62	+0.0
3,799,104	-		ABIE53_003376	0.62	+0.3
3,799,104	-		ABIE53_003376	0.62	-1.7
3,799,178	+		ABIE53_003376	0.76	+0.7
3,799,178	+		ABIE53_003376	0.76	-1.2
3,799,178	+		ABIE53_003376	0.76	+0.0
3,799,178	+		ABIE53_003376	0.76	+1.8
3,799,178	+		ABIE53_003376	0.76	-1.1
3,799,179	-		ABIE53_003376	0.76	-1.1
3,799,179	-		ABIE53_003376	0.76	+2.0
3,799,179	-		ABIE53_003376	0.76	+0.5
3,799,179	-		ABIE53_003376	0.76	+0.6
3,799,247	+		ABIE53_003376	0.88	+1.0
3,799,248	-		ABIE53_003376	0.88	+0.2
3,799,248	-		ABIE53_003376	0.88	-0.2
3,799,248	-		ABIE53_003376	0.88	+0.1
3,799,385	+				+0.6
3,799,385	+				+0.6
3,799,399	-				+1.9
3,799,454	-				-0.3
3,799,454	-				+0.6
3,799,482	+				+1.1
3,799,482	+				+0.3
3,799,483	-				-0.7
3,799,483	-				-0.7
3,799,791	+		ABIE53_003377	0.44	+0.1
3,799,791	+		ABIE53_003377	0.44	-0.4
3,799,791	+		ABIE53_003377	0.44	-0.1
3,799,791	+		ABIE53_003377	0.44	+0.3
3,799,791	+		ABIE53_003377	0.44	-0.7
3,799,791	+		ABIE53_003377	0.44	+0.1
3,799,792	-		ABIE53_003377	0.44	+3.1
3,799,792	-		ABIE53_003377	0.44	-0.2
3,799,792	-		ABIE53_003377	0.44	-0.0
3,799,792	-		ABIE53_003377	0.44	+3.6
3,799,792	-		ABIE53_003377	0.44	-0.2
3,799,792	-		ABIE53_003377	0.44	+0.4
3,799,792	-		ABIE53_003377	0.44	-0.8
3,799,792	-		ABIE53_003377	0.44	+0.6
3,799,828	+		ABIE53_003377	0.51	-1.2
3,799,828	+		ABIE53_003377	0.51	+0.2
3,799,828	+		ABIE53_003377	0.51	-1.7
3,799,828	+		ABIE53_003377	0.51	+0.7
3,799,828	+		ABIE53_003377	0.51	-0.4
3,799,828	+		ABIE53_003377	0.51	-0.2
3,799,828	+		ABIE53_003377	0.51	+0.6
3,799,828	+		ABIE53_003377	0.51	-0.5
3,799,828	+		ABIE53_003377	0.51	-1.4
3,799,828	+		ABIE53_003377	0.51	-0.6
3,799,828	+		ABIE53_003377	0.51	+1.2
3,799,828	+		ABIE53_003377	0.51	+2.1
3,799,828	+		ABIE53_003377	0.51	+0.5
3,799,828	+		ABIE53_003377	0.51	-0.3
3,799,828	+		ABIE53_003377	0.51	-0.7
3,799,829	-		ABIE53_003377	0.51	+2.2
3,799,829	-		ABIE53_003377	0.51	+0.1
3,799,829	-		ABIE53_003377	0.51	+0.3
3,799,829	-		ABIE53_003377	0.51	+1.1
3,799,829	-		ABIE53_003377	0.51	+0.6
3,799,829	-		ABIE53_003377	0.51	+0.0
3,799,829	-		ABIE53_003377	0.51	+0.6
3,799,873	+		ABIE53_003377	0.60	+0.1
3,799,874	-		ABIE53_003377	0.60	+0.8
3,799,874	-		ABIE53_003377	0.60	+0.5
3,799,898	+		ABIE53_003377	0.65	-1.4
3,799,940	+		ABIE53_003377	0.73	+0.3
3,799,953	+		ABIE53_003377	0.75	+0.3
3,800,076	+				-0.4
3,800,076	+				+0.7
3,800,077	-				+0.4
3,800,077	-				+1.4
3,800,077	-				-0.1
3,800,077	-				-0.1
3,800,077	-				-0.3
3,800,077	-				+0.5
3,800,077	-				-0.5
3,800,077	-				-1.5
3,800,234	+		ABIE53_003378	0.18	+1.5
3,800,234	+		ABIE53_003378	0.18	+0.8
3,800,235	-		ABIE53_003378	0.18	+0.3
3,800,235	-		ABIE53_003378	0.18	-0.0
3,800,246	+		ABIE53_003378	0.20	+0.7
3,800,247	-		ABIE53_003378	0.20	+0.6
3,800,267	+		ABIE53_003378	0.24	+0.7
3,800,267	+		ABIE53_003378	0.24	+0.6
3,800,267	+		ABIE53_003378	0.24	-0.2
3,800,267	+		ABIE53_003378	0.24	-1.9
3,800,267	+		ABIE53_003378	0.24	+0.3
3,800,268	-		ABIE53_003378	0.24	+1.1
3,800,268	-		ABIE53_003378	0.24	+0.6
3,800,269	+		ABIE53_003378	0.25	+0.5
3,800,269	+		ABIE53_003378	0.25	+1.6
3,800,269	+		ABIE53_003378	0.25	-0.1
3,800,269	+		ABIE53_003378	0.25	+0.2
3,800,269	+		ABIE53_003378	0.25	+0.3
3,800,269	+		ABIE53_003378	0.25	+0.5
3,800,269	+		ABIE53_003378	0.25	+0.6
3,800,269	+		ABIE53_003378	0.25	+0.3
3,800,269	+		ABIE53_003378	0.25	+0.6
3,800,269	+		ABIE53_003378	0.25	+0.2
3,800,270	-		ABIE53_003378	0.25	-0.4
3,800,270	-		ABIE53_003378	0.25	+3.2
3,800,270	-		ABIE53_003378	0.25	+0.9
3,800,270	-		ABIE53_003378	0.25	+0.4
3,800,296	+		ABIE53_003378	0.30	-0.4
3,800,296	+		ABIE53_003378	0.30	+0.6
3,800,296	+		ABIE53_003378	0.30	-0.7
3,800,296	+		ABIE53_003378	0.30	+1.3
3,800,296	+		ABIE53_003378	0.30	+0.6