Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4716

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
6,190,277	+				-0.1
6,190,308	+				+0.5
6,190,308	+				-0.5
6,190,309	-				-1.7
6,190,464	+				-0.2
6,190,465	-				-1.7
6,190,465	-				+0.0
6,190,517	-				-0.1
6,190,536	-				-1.1
6,190,619	-				-0.6
6,190,621	-				-2.4
6,190,750	+		BT4715	0.30	-0.3
6,190,750	+		BT4715	0.30	-0.1
6,190,757	+		BT4715	0.31	+0.3
6,190,758	-		BT4715	0.32	-1.4
6,190,760	+		BT4715	0.32	-0.9
6,190,790	+		BT4715	0.38	-1.9
6,190,818	-		BT4715	0.44	-0.5
6,190,827	+		BT4715	0.46	+0.9
6,190,911	+		BT4715	0.64	+0.7
6,190,911	+		BT4715	0.64	-0.8
6,190,912	-		BT4715	0.64	-2.1
6,190,960	+		BT4715	0.74	+3.2
6,190,989	+		BT4715	0.80	+0.0
6,190,989	+		BT4715	0.80	-2.7
6,191,033	+		BT4715	0.89	-1.4
6,191,128	+				-1.3
6,191,129	-				+0.5
6,191,241	+				+1.3
6,191,246	-				-1.4
6,191,246	-				-2.2
6,191,246	-				-0.9
6,191,321	+		BT4716	0.11	-0.7
6,191,510	-		BT4716	0.31	-0.9
6,191,522	-		BT4716	0.33	+0.0
6,191,530	-		BT4716	0.33	-0.8
6,191,533	+		BT4716	0.34	-2.3
6,191,584	+		BT4716	0.39	-0.9
6,191,585	-		BT4716	0.39	-0.1
6,191,585	-		BT4716	0.39	-0.3
6,191,613	-		BT4716	0.42	-1.9
6,191,639	+		BT4716	0.45	-2.5
6,191,655	-		BT4716	0.47	-1.9
6,191,722	-		BT4716	0.54	-0.2
6,191,726	-		BT4716	0.55	-0.9
6,191,762	-		BT4716	0.58	-1.5
6,191,797	+		BT4716	0.62	-1.1
6,191,833	+		BT4716	0.66	-3.0
6,191,892	-		BT4716	0.72	+1.1
6,191,915	-		BT4716	0.75	-0.7
6,192,014	+		BT4716	0.86	-1.2
6,192,051	-		BT4716	0.90	-1.1
6,192,073	+				-1.6
6,192,073	+				-0.7
6,192,145	-				+0.7
6,192,302	+		BT4717	0.16	-1.2
6,192,306	+		BT4717	0.16	-3.4
6,192,306	+		BT4717	0.16	-0.9
6,192,307	-		BT4717	0.17	-1.4
6,192,341	+		BT4717	0.20	-1.1
6,192,342	-		BT4717	0.20	-0.9
6,192,425	+		BT4717	0.29	-0.4
6,192,487	-		BT4717	0.36	-0.7
6,192,492	+		BT4717	0.36	-1.3
6,192,622	-		BT4717	0.50	-1.4
6,192,675	+		BT4717	0.56	-2.6
6,192,707	+		BT4717	0.59	+0.1
6,192,708	-		BT4717	0.59	+0.6
6,192,768	+		BT4717	0.66	-0.5
6,192,864	-		BT4717	0.76	-1.7
6,192,907	-		BT4717	0.81	+1.6
6,192,938	-		BT4717	0.84	-2.3
6,192,953	+		BT4717	0.86	+0.7
6,192,954	-		BT4717	0.86	+1.6
6,192,958	-		BT4717	0.86	-0.7
6,193,004	-				-0.3
6,193,045	-				+0.7
6,193,135	+				-0.7
6,193,143	+				-0.4