Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4465

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
5,874,038	+		BT4463	0.86	+0.2
5,874,039	-		BT4463	0.86	+0.3
5,874,039	-		BT4463	0.86	-3.0
5,874,117	+				-2.3
5,874,117	+				-0.5
5,874,118	-				-1.7
5,874,127	-				-0.7
5,874,144	-				-1.6
5,874,150	+				-1.7
5,874,151	-				-1.2
5,874,163	-				-1.6
5,874,216	-				-1.4
5,874,249	-		BT4464	0.12	-1.1
5,874,251	-		BT4464	0.12	-0.3
5,874,256	+		BT4464	0.13	-3.4
5,874,257	-		BT4464	0.13	-0.6
5,874,384	+		BT4464	0.33	-2.0
5,874,471	+		BT4464	0.46	-1.7
5,874,487	+		BT4464	0.48	-2.1
5,874,528	-		BT4464	0.55	-0.7
5,874,586	+		BT4464	0.64	-1.8
5,874,587	-		BT4464	0.64	-1.8
5,874,590	+		BT4464	0.64	+0.3
5,874,591	-		BT4464	0.64	+0.3
5,874,659	-		BT4464	0.75	-0.1
5,874,659	-		BT4464	0.75	-2.4
5,874,659	-		BT4464	0.75	+0.3
5,874,701	+		BT4464	0.81	-1.0
5,874,761	-				-2.1
5,874,850	+				-1.6
5,874,851	-				+0.8
5,874,853	-				-1.2
5,874,969	+				-0.7
5,875,000	-				+0.9
5,875,013	+				-0.1
5,875,013	+				+0.1
5,875,058	-				-1.1
5,875,065	-				-0.5
5,875,067	+				-1.1
5,875,067	+				-0.3
5,875,080	-				-2.0
5,875,210	-		BT4465	0.11	-1.5
5,875,242	-		BT4465	0.12	-1.4
5,875,251	+		BT4465	0.13	-1.6
5,875,303	+		BT4465	0.15	+0.7
5,875,327	+		BT4465	0.17	-2.4
5,875,328	-		BT4465	0.17	+1.1
5,875,445	-		BT4465	0.23	-0.3
5,875,492	+		BT4465	0.26	-0.8
5,875,543	-		BT4465	0.28	-1.2
5,875,548	-		BT4465	0.29	-2.1
5,875,550	+		BT4465	0.29	-2.3
5,875,551	-		BT4465	0.29	-0.5
5,875,559	+		BT4465	0.29	+1.0
5,875,669	+		BT4465	0.35	-1.1
5,875,670	-		BT4465	0.35	-0.8
5,875,792	+		BT4465	0.42	+1.9
5,875,802	+		BT4465	0.42	-1.7
5,875,802	+		BT4465	0.42	-1.2
5,875,802	+		BT4465	0.42	-0.5
5,875,850	-		BT4465	0.45	-0.8
5,875,896	+		BT4465	0.47	-2.3
5,875,929	-		BT4465	0.49	-2.2
5,876,025	-		BT4465	0.54	-2.3
5,876,099	-		BT4465	0.58	-0.5
5,876,134	+		BT4465	0.60	+0.1
5,876,147	+		BT4465	0.61	-0.1
5,876,147	+		BT4465	0.61	-1.0
5,876,158	+		BT4465	0.61	-0.7
5,876,174	-		BT4465	0.62	-1.7
5,876,194	-		BT4465	0.63	-1.4
5,876,195	+		BT4465	0.63	-2.7
5,876,205	-		BT4465	0.64	-3.5
5,876,205	-		BT4465	0.64	-1.7
5,876,248	-		BT4465	0.66	+0.1
5,876,382	+		BT4465	0.73	+0.6
5,876,418	-		BT4465	0.75	+0.7
5,876,457	-		BT4465	0.77	-1.6
5,876,505	+		BT4465	0.80	-0.2
5,876,509	+		BT4465	0.80	-2.3
5,876,603	+		BT4465	0.85	-1.8
5,876,603	+		BT4465	0.85	-1.7
5,876,604	-		BT4465	0.85	-1.4
5,876,754	+				-0.6
5,876,754	+				-0.8
5,876,755	-				+0.3
5,876,759	+				-1.3
5,876,870	-				-1.1
5,876,878	-				-1.7
5,876,885	-				-2.8
5,876,903	-				-1.3
5,876,905	-				-0.4
5,876,911	+				-2.3
5,876,911	+				-2.1
5,876,913	+				-1.5
5,876,967	+				+1.2
5,877,002	+		BT4466	0.13	-1.0
5,877,055	-		BT4466	0.36	+4.2
5,877,065	-		BT4466	0.41	-0.8
5,877,281	+				-1.6
5,877,357	+		BT4467	0.22	-1.3
5,877,501	+		BT4467	0.55	-1.0
5,877,511	+		BT4467	0.57	+0.3
5,877,579	+		BT4467	0.73	-0.6
5,877,580	+		BT4467	0.73	-0.9
5,877,594	+		BT4467	0.76	-0.7
5,877,600	+		BT4467	0.78	-1.7
5,877,728	+				-2.0
5,877,751	-				-1.3
5,877,751	-				+0.1
5,877,754	+				-0.0
5,877,781	+				-2.8
5,877,782	-				-0.5