Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4457

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
5,866,460	-		BT4456	0.28	-0.3
5,866,481	+		BT4456	0.29	-0.7
5,866,482	-		BT4456	0.29	-5.6
5,866,608	+		BT4456	0.39	-0.9
5,866,712	-		BT4456	0.46	-0.9
5,866,746	-		BT4456	0.48	-0.4
5,866,746	-		BT4456	0.48	+0.7
5,866,869	+		BT4456	0.57	-1.1
5,866,869	+		BT4456	0.57	-0.4
5,866,870	-		BT4456	0.57	-2.2
5,866,870	-		BT4456	0.57	-0.1
5,866,870	-		BT4456	0.57	-0.9
5,866,871	+		BT4456	0.58	-1.6
5,866,872	-		BT4456	0.58	-0.3
5,866,908	+		BT4456	0.60	+0.1
5,866,917	-		BT4456	0.61	-2.4
5,866,920	-		BT4456	0.61	-1.1
5,866,964	+		BT4456	0.64	-1.5
5,867,007	-		BT4456	0.67	+0.9
5,867,007	-		BT4456	0.67	-0.8
5,867,043	+		BT4456	0.70	-0.1
5,867,044	-		BT4456	0.70	-0.9
5,867,044	-		BT4456	0.70	-0.6
5,867,050	-		BT4456	0.70	-1.8
5,867,054	+		BT4456	0.71	+1.1
5,867,110	-		BT4456	0.75	-1.4
5,867,139	-		BT4456	0.77	-2.2
5,867,246	-		BT4456	0.85	-2.3
5,867,347	-				-0.3
5,867,434	+				-0.2
5,867,435	-				-1.1
5,867,491	+				+0.7
5,867,491	+				-1.4
5,867,526	+		BT4457	0.12	+1.3
5,867,527	-		BT4457	0.12	+1.0
5,867,527	-		BT4457	0.12	-0.5
5,867,593	-		BT4457	0.24	-1.3
5,867,610	+		BT4457	0.26	-0.1
5,867,611	-		BT4457	0.27	-0.2
5,867,694	+		BT4457	0.41	-0.1
5,867,695	-		BT4457	0.41	-0.1
5,867,897	+		BT4457	0.76	-0.6
5,868,028	-				+1.4
5,868,087	+				-0.4
5,868,087	+				-1.7
5,868,123	-				-0.7
5,868,130	-				-1.3
5,868,173	+				-0.1
5,868,175	+				-1.7
5,868,177	+				-1.6
5,868,178	-				-0.7
5,868,178	-				+0.0
5,868,225	-				-0.2
5,868,225	-				-0.7
5,868,229	-				-0.6
5,868,231	+				+0.5
5,868,245	-				+0.7
5,868,253	-				-3.0
5,868,258	-				-0.9
5,868,384	+		BT4458	0.16	-1.8
5,868,478	-		BT4458	0.27	-0.4
5,868,481	+		BT4458	0.27	+0.6
5,868,564	-		BT4458	0.37	-1.0
5,868,745	+		BT4458	0.58	-1.4
5,868,746	-		BT4458	0.58	-1.6
5,868,746	-		BT4458	0.58	-0.4
5,868,786	+		BT4458	0.62	-2.6
5,868,787	-		BT4458	0.63	-0.9
5,868,787	-		BT4458	0.63	-0.9
5,868,830	+		BT4458	0.67	-0.7
5,868,831	-		BT4458	0.68	+1.1
5,868,832	+		BT4458	0.68	-1.4
5,868,833	-		BT4458	0.68	-1.8
5,868,839	-		BT4458	0.68	-0.7
5,868,839	-		BT4458	0.68	-0.4
5,868,912	+		BT4458	0.77	-0.4
5,869,027	+				-2.9