Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3881

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
5,051,984	-				-0.3
5,051,984	-				-3.1
5,052,012	-				-1.0
5,052,012	-				-0.6
5,052,014	-				-1.3
5,052,025	-		BT3879	0.11	-0.5
5,052,063	+		BT3879	0.22	-0.5
5,052,173	+		BT3879	0.54	-2.1
5,052,271	+		BT3879	0.81	-0.2
5,052,272	-		BT3879	0.82	+0.2
5,052,272	-		BT3879	0.82	-1.7
5,052,290	+		BT3879	0.87	-1.2
5,052,311	+				-0.6
5,052,337	+				-1.2
5,052,338	-				-1.0
5,052,431	+				-1.3
5,052,434	+				-2.0
5,052,435	-				+0.9
5,052,476	-				-0.8
5,052,476	-				+0.2
5,052,513	-		BT3880	0.12	+1.0
5,052,564	+		BT3880	0.21	-0.6
5,052,640	-		BT3880	0.34	+0.5
5,052,640	-		BT3880	0.34	-0.6
5,052,739	+		BT3880	0.51	+1.1
5,052,740	-		BT3880	0.51	+0.2
5,052,803	+		BT3880	0.62	-1.7
5,052,804	-				+0.4
5,052,825	+		BT3880	0.65	-1.3
5,052,852	-		BT3880	0.70	-0.6
5,052,893	+		BT3880	0.77	-2.2
5,052,893	+		BT3880	0.77	-1.1
5,052,894	-		BT3880	0.77	-1.2
5,052,894	-		BT3880	0.77	-1.1
5,052,969	+				-2.5
5,053,016	-				+0.3
5,053,016	-				+0.4
5,053,016	-				-1.7
5,053,030	-				-1.6
5,053,059	+				-2.4
5,053,123	+		BT3881	0.15	-3.1
5,053,124	-		BT3881	0.15	-0.8
5,053,124	-				-1.0
5,053,175	-		BT3881	0.19	+0.4
5,053,231	+		BT3881	0.24	+4.1
5,053,232	-		BT3881	0.24	-0.6
5,053,234	-		BT3881	0.24	-0.4
5,053,262	+		BT3881	0.26	-1.6
5,053,413	+		BT3881	0.39	+0.4
5,053,416	-		BT3881	0.40	+1.0
5,053,416	-		BT3881	0.40	-0.7
5,053,497	-		BT3881	0.46	-1.3
5,053,524	+		BT3881	0.49	-1.9
5,053,524	+		BT3881	0.49	-1.7
5,053,538	-		BT3881	0.50	-1.7
5,053,549	+		BT3881	0.51	+0.4
5,053,567	+		BT3881	0.52	+0.5
5,053,567	+		BT3881	0.52	-2.3
5,053,593	+		BT3881	0.55	-1.9
5,053,594	-		BT3881	0.55	+0.2
5,053,683	-		BT3881	0.62	-0.7
5,053,698	+		BT3881	0.64	-1.3
5,053,836	+		BT3881	0.75	-3.3
5,053,840	+		BT3881	0.76	-0.0
5,053,846	+		BT3881	0.76	-2.3
5,053,847	-		BT3881	0.76	+0.9
5,053,847	-		BT3881	0.76	-0.3
5,053,875	+		BT3881	0.79	-0.8
5,053,879	-		BT3881	0.79	-0.1
5,054,122	+				-1.7
5,054,142	+				-0.1
5,054,205	+				-2.6
5,054,232	+				+0.6
5,054,248	+				-1.5
5,054,353	+		BT3882	0.21	-2.4
5,054,399	+		BT3882	0.28	+1.0
5,054,419	+		BT3882	0.31	+1.8
5,054,479	+		BT3882	0.40	-1.7
5,054,589	+		BT3882	0.57	-0.6
5,054,633	+		BT3882	0.63	-0.7
5,054,812	+				-0.7
5,054,873	+				-1.6
5,054,873	+				+0.1
5,054,902	+				-1.3
5,054,931	+				-1.8
5,054,943	+		BT3883	0.11	-3.4
5,055,053	+		BT3883	0.29	-0.3
5,055,053	+		BT3883	0.29	+1.2
5,055,103	+		BT3883	0.37	+2.2