Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3769

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
4,889,316	-		BT3768	0.22	-0.0
4,889,316	-		BT3768	0.22	-2.6
4,889,317	+		BT3768	0.22	-0.8
4,889,320	+		BT3768	0.23	-1.0
4,889,321	-		BT3768	0.23	-3.1
4,889,354	-		BT3768	0.26	+1.0
4,889,418	-		BT3768	0.33	-2.5
4,889,418	-		BT3768	0.33	+1.3
4,889,454	-		BT3768	0.37	-1.1
4,889,539	+		BT3768	0.47	-0.6
4,889,539	+		BT3768	0.47	-0.1
4,889,598	+		BT3768	0.53	-1.5
4,889,598	+		BT3768	0.53	-0.6
4,889,612	+		BT3768	0.55	-0.5
4,889,628	+		BT3768	0.57	-0.3
4,889,628	+		BT3768	0.57	+1.6
4,889,629	-		BT3768	0.57	-1.3
4,889,668	+		BT3768	0.61	-1.8
4,889,669	-		BT3768	0.61	-1.0
4,889,719	-		BT3768	0.67	-1.3
4,889,719	-		BT3768	0.67	-1.2
4,889,723	-		BT3768	0.67	-0.4
4,889,786	+		BT3768	0.74	-2.1
4,889,817	-		BT3768	0.78	+0.6
4,889,819	-		BT3768	0.78	-0.2
4,889,977	+				+1.3
4,889,978	-				-2.7
4,890,027	-				-0.8
4,890,082	+				-0.3
4,890,083	-				+0.9
4,890,085	-				+0.4
4,890,167	-				-0.8
4,890,270	-		BT3769	0.30	-1.2
4,890,282	+		BT3769	0.33	-1.5
4,890,314	-		BT3769	0.40	-2.3
4,890,329	+		BT3769	0.44	+0.5
4,890,329	+		BT3769	0.44	-3.7
4,890,330	-		BT3769	0.44	-1.0
4,890,378	-		BT3769	0.55	-1.3
4,890,399	-		BT3769	0.60	-2.0
4,890,451	-		BT3769	0.72	-1.8
4,890,473	+		BT3769	0.77	-2.7
4,890,494	+		BT3769	0.82	-1.0
4,890,499	-		BT3769	0.83	-2.0
4,890,570	+				+0.4
4,890,582	+				+0.7
4,890,582	+				-0.4
4,890,617	+				+0.4
4,890,626	-				-2.1
4,890,626	-				-0.4
4,890,626	-				+0.2
4,890,629	-				-2.4
4,890,629	-				-1.2
4,890,736	-				-0.0
4,890,818	-				-1.8
4,891,048	+				+0.6
4,891,078	-				-0.9
4,891,106	-				+1.0
4,891,148	+				-1.9
4,891,148	+				-0.8
4,891,197	+				-1.5
4,891,197	+				-1.0
4,891,342	+		BT3770	0.23	+1.0
4,891,534	+		BT3770	0.56	-1.2