Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3464

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
4,459,015	+		BT3462	0.86	-1.8
4,459,045	+		BT3462	0.88	-0.3
4,459,131	+				-1.4
4,459,819	+				-1.4
4,459,828	+				-0.5
4,459,829	-				-0.9
4,459,993	-		BT3464	0.13	-1.5
4,459,993	-		BT3464	0.13	-2.6
4,459,993	-		BT3464	0.13	-3.1
4,460,097	+		BT3464	0.20	-1.4
4,460,183	+		BT3464	0.27	-0.7
4,460,184	-		BT3464	0.27	+1.1
4,460,186	-		BT3464	0.27	-1.6
4,460,186	-		BT3464	0.27	-1.1
4,460,249	+		BT3464	0.32	+2.1
4,460,441	-		BT3464	0.47	-2.0
4,460,441	-		BT3464	0.47	-0.4
4,460,556	+		BT3464	0.56	-2.5
4,460,762	-		BT3464	0.71	-0.3
4,460,775	-		BT3464	0.72	-2.0
4,460,775	-		BT3464	0.72	-1.7
4,460,777	-		BT3464	0.72	-1.5
4,460,802	-		BT3464	0.74	-3.1
4,460,854	-		BT3464	0.78	-0.6
4,460,975	-		BT3464	0.88	-1.0
4,461,040	-				-1.9
4,461,073	-				-1.1
4,461,140	-				-1.0
4,461,144	-				-1.4
4,461,167	+				-1.1
4,461,273	+				-0.3
4,461,274	-				-1.7
4,461,274	-				-0.1
4,461,279	-				+0.1
4,461,279	-				-0.2
4,461,288	+				-1.5
4,461,289	-				-3.1
4,461,289	-				-2.2
4,461,290	+				-1.9
4,461,291	-				-1.4
4,461,302	-				-1.0
4,461,360	+				-1.4
4,461,441	+				-1.4
4,461,442	-				-1.3
4,461,443	+				-0.5
4,461,469	+				-0.5
4,461,469	+				-1.6
4,461,469	+				-0.5
4,461,469	+				-1.5
4,461,471	+				+0.5
4,461,471	+				-1.5
4,461,476	-				-0.7
4,461,516	+				+0.1
4,461,533	-				-1.3
4,461,560	+				-0.9
4,461,560	+				-0.8
4,461,561	-				+0.3
4,461,648	+		BT3465	0.12	-3.0
4,461,688	+		BT3465	0.13	-1.6
4,461,706	+		BT3465	0.14	-0.3
4,461,719	+		BT3465	0.14	-2.2
4,461,801	+		BT3465	0.16	-0.6
4,461,813	-		BT3465	0.16	-0.1
4,461,822	-		BT3465	0.16	-0.2
4,461,907	+		BT3465	0.18	-0.6
4,461,908	-		BT3465	0.19	-0.2
4,461,908	-		BT3465	0.19	-1.5
4,461,998	-		BT3465	0.21	-0.7
4,462,002	-		BT3465	0.21	-0.5
4,462,038	+		BT3465	0.22	-2.0