Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2789

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
3,458,084	+		BT2787	0.82	+2.9
3,458,085	-		BT2787	0.82	+4.2
3,458,142	+		BT2787	0.86	-0.6
3,458,145	-		BT2787	0.86	+3.9
3,458,160	+		BT2787	0.87	+5.1
3,458,200	+		BT2787	0.89	+1.9
3,458,318	+				+4.6
3,458,318	+				+6.1
3,458,319	-				+2.6
3,458,319	-				+6.9
3,458,319	-				+3.8
3,458,319	-				+3.4
3,458,319	-				-1.4
3,458,347	+				+5.5
3,458,348	-				+4.6
3,458,400	-				-2.4
3,458,407	-				+0.4
3,458,417	-				-0.7
3,458,476	-				-1.3
3,458,476	-				-1.8
3,458,476	-				-1.9
3,458,478	+				+0.0
3,458,491	+				-2.8
3,458,532	+				-4.1
3,458,578	+				+1.4
3,458,605	+		BT2788	0.14	-1.2
3,458,631	-		BT2788	0.19	+1.2
3,458,633	-				-0.6
3,458,639	-		BT2788	0.21	-2.4
3,458,640	+		BT2788	0.21	+0.4
3,458,641	-		BT2788	0.21	-1.4
3,458,733	-				-0.6
3,458,733	-		BT2788	0.38	-1.1
3,458,736	+		BT2788	0.39	-2.6
3,458,736	+		BT2788	0.39	-1.4
3,458,822	+		BT2788	0.55	+0.1
3,458,822	+		BT2788	0.55	-1.2
3,458,822	+		BT2788	0.55	+0.4
3,458,854	-		BT2788	0.62	+0.3
3,458,862	+		BT2788	0.63	-2.3
3,458,863	-		BT2788	0.63	-0.2
3,458,863	-		BT2788	0.63	-1.0
3,458,866	+		BT2788	0.64	-0.8
3,458,866	+		BT2788	0.64	-2.0
3,458,872	+		BT2788	0.65	-2.2
3,458,873	-		BT2788	0.65	-0.3
3,458,876	-		BT2788	0.66	+1.5
3,458,876	-		BT2788	0.66	-2.5
3,458,991	+		BT2788	0.88	+0.0
3,459,013	+				-1.3
3,459,014	-				-3.7
3,459,014	-				-2.1
3,459,027	+				-0.4
3,459,048	+				-0.1
3,459,048	+				-2.2
3,459,049	-				-2.4
3,459,050	+				-2.3
3,459,051	-				-1.0
3,459,062	-				-0.3
3,459,070	-				-0.2
3,459,093	+				-2.2
3,459,100	+				-1.4
3,459,135	+		BT2789	0.15	-1.6
3,459,136	-		BT2789	0.15	-2.5
3,459,197	+		BT2789	0.26	-0.0
3,459,197	+		BT2789	0.26	-0.9
3,459,226	+		BT2789	0.31	-0.3
3,459,227	-		BT2789	0.31	-0.8
3,459,227	-		BT2789	0.31	-3.3
3,459,228	+		BT2789	0.32	-1.7
3,459,265	+		BT2789	0.38	-1.7
3,459,337	-		BT2789	0.51	-0.2
3,459,357	+		BT2789	0.55	-0.1
3,459,357	+		BT2789	0.55	-1.9
3,459,358	-		BT2789	0.55	+1.5
3,459,394	-		BT2789	0.61	-1.9
3,459,394	-		BT2789	0.61	-0.6
3,459,394	-		BT2789	0.61	-0.2
3,459,403	-		BT2789	0.63	+0.6
3,459,421	+		BT2789	0.66	-1.1
3,459,423	+		BT2789	0.66	-0.3
3,459,423	+		BT2789	0.66	-0.5
3,459,423	+		BT2789	0.66	-0.2
3,459,424	-		BT2789	0.67	-1.4
3,459,424	-		BT2789	0.67	-1.3
3,459,424	-		BT2789	0.67	-0.6
3,459,520	+		BT2789	0.84	-1.2
3,459,556	-				-0.1
3,459,603	+				+0.6
3,459,604	-				-1.4
3,459,604	-				-2.4
3,459,604	-				-0.9
3,459,635	+				+0.0
3,459,670	+				-0.3
3,459,670	+				-1.2
3,459,670	+				+0.4
3,459,671	-				+2.0
3,459,671	-				-1.2
3,459,672	+				+0.2
3,459,673	-				-1.7
3,459,719	-				-1.6
3,459,723	-				+0.0
3,459,723	-				-2.4
3,459,723	-				+0.1
3,459,727	-				-2.0
3,459,727	-				-0.1
3,459,742	+				-0.6