Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2333

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
2,914,015	-				-1.4
2,914,015	-				-0.2
2,914,017	-				+0.4
2,914,017	-				-0.5
2,914,023	-				+1.4
2,914,023	-				+0.1
2,914,023	-				+0.2
2,914,025	+				+0.5
2,914,037	+				-1.6
2,914,037	+				+0.9
2,914,039	+				+0.5
2,914,045	+				-1.5
2,914,046	-				-1.4
2,914,046	-				+0.0
2,914,059	+				-0.1
2,914,059	+				+0.1
2,914,150	-		BT2331	0.29	-1.8
2,914,164	-		BT2331	0.33	-0.5
2,914,203	+		BT2331	0.46	-1.6
2,914,203	+		BT2331	0.46	+0.4
2,914,225	-		BT2331	0.53	-1.7
2,914,240	+		BT2331	0.57	-1.2
2,914,241	-		BT2331	0.58	+1.3
2,914,247	+		BT2331	0.59	-2.7
2,914,247	+		BT2331	0.59	-1.7
2,914,248	-		BT2331	0.60	-0.9
2,914,248	-		BT2331	0.60	-0.7
2,914,249	+		BT2331	0.60	-1.4
2,914,249	+		BT2331	0.60	-0.7
2,914,249	+		BT2331	0.60	-1.2
2,914,250	-		BT2331	0.60	-1.2
2,914,250	-		BT2331	0.60	-1.4
2,914,250	-		BT2331	0.60	-0.2
2,914,251	+		BT2331	0.61	-2.3
2,914,254	-		BT2331	0.62	-0.7
2,914,272	+		BT2331	0.67	+0.1
2,914,337	+		BT2331	0.88	-0.8
2,914,338	-		BT2331	0.88	-0.7
2,914,358	+				-0.2
2,914,358	+				-1.7
2,914,359	-				-1.7
2,914,359	-				-0.2
2,914,376	-				-1.2
2,914,434	+				-1.5
2,914,448	+				+0.1
2,914,448	+				+0.1
2,914,449	-				+0.2
2,914,453	-				-1.1
2,914,490	+				-3.4
2,914,491	-				+0.2
2,914,537	+				+1.4
2,914,537	+				-1.3
2,914,537	+				-0.1
2,914,561	+				-2.4
2,914,567	-				-0.9
2,914,611	-				-1.4
2,914,742	+		BT2332	0.32	+0.1
2,914,743	-		BT2332	0.32	-1.7
2,914,745	+		BT2332	0.32	-1.5
2,914,746	-		BT2332	0.33	-2.3
2,914,746	-		BT2332	0.33	-0.3
2,914,759	+		BT2332	0.36	-0.2
2,914,834	+		BT2332	0.58	-1.3
2,914,834	+		BT2332	0.58	-0.5
2,914,835	-		BT2332	0.58	-3.4
2,914,872	-		BT2332	0.68	-1.1
2,914,872	-		BT2332	0.68	-2.3
2,914,941	+		BT2332	0.88	-1.2
2,914,942	-		BT2332	0.88	-1.1
2,914,978	+				+0.8
2,914,983	+				-2.4
2,914,983	+				-1.7
2,914,983	+				-1.5
2,915,015	+				-2.0
2,915,138	+				-1.7
2,915,142	+				-1.1
2,915,280	+		BT2333	0.14	-1.6
2,915,280	+		BT2333	0.14	-1.4
2,915,280	+		BT2333	0.14	-0.3
2,915,440	+		BT2333	0.22	-1.6
2,915,462	+		BT2333	0.23	-1.9
2,915,582	+		BT2333	0.29	+0.2
2,915,588	+		BT2333	0.29	-1.2
2,915,651	+		BT2333	0.32	+0.1
2,915,717	+		BT2333	0.35	-1.3
2,915,725	+		BT2333	0.36	-2.6
2,915,852	+		BT2333	0.42	-2.2
2,915,886	+		BT2333	0.43	-2.7
2,915,886	+		BT2333	0.43	-1.1
2,916,074	+		BT2333	0.53	-2.0
2,916,197	+		BT2333	0.59	-2.8
2,916,198	-		BT2333	0.59	-3.1
2,916,210	+		BT2333	0.59	-0.9
2,916,383	+		BT2333	0.68	-0.6
2,916,447	+		BT2333	0.71	-3.7
2,916,447	+		BT2333	0.71	-1.2
2,916,462	+		BT2333	0.72	-1.5
2,916,465	-		BT2333	0.72	-1.8
2,916,639	+		BT2333	0.80	-0.9
2,916,641	+		BT2333	0.80	-2.2
2,916,719	+		BT2333	0.84	+2.4
2,916,719	+		BT2333	0.84	-0.0
2,916,720	-		BT2333	0.84	-2.5
2,916,848	+				-2.6
2,916,849	-				-3.3
2,916,902	+				-2.9
2,916,930	+				-0.9
2,917,024	-				-1.8
2,917,105	+		BT2334	0.23	+0.1
2,917,105	+		BT2334	0.23	-1.0
2,917,147	+		BT2334	0.35	-2.1
2,917,147	+		BT2334	0.35	-1.9
2,917,207	+		BT2334	0.53	-1.4
2,917,207	+		BT2334	0.53	-1.2
2,917,207	+		BT2334	0.53	+0.4
2,917,207	+		BT2334	0.53	-1.7
2,917,207	-		BT2334	0.53	+1.0
2,917,213	+		BT2334	0.54	-3.3
2,917,213	+		BT2334	0.54	-0.2
2,917,214	-		BT2334	0.55	-0.5
2,917,295	+		BT2334	0.78	-0.5
2,917,338	+				-2.5
2,917,361	-				-1.1
2,917,369	+				-0.8
2,917,369	+				-1.4
2,917,411	+				-0.7
2,917,411	+				-0.1
2,917,431	-				-1.2
2,917,433	+				-1.5
2,917,434	-				-2.8
2,917,435	+				-1.7
2,917,435	+				-1.5
2,917,435	+				-1.7
2,917,435	+				+1.1
2,917,435	+				-1.8
2,917,436	-				+0.5
2,917,444	+				-2.1
2,917,444	+				+2.0
2,917,445	-				-2.4
2,917,574	+				-1.8
2,917,574	+				-0.7
2,917,574	+				+0.1
2,917,574	+				-0.2
2,917,574	+				-0.2
2,917,575	-				-2.5
2,917,575	-				-1.6
2,917,575	-				+2.1
2,917,576	+				-0.3
2,917,623	+				-0.9
2,917,720	-				-2.3
2,917,720	-				-0.8
2,917,729	+				-0.8
2,917,732	+				+0.5
2,917,733	-				-0.1
2,917,746	-				+0.2
2,917,746	-				-1.7
2,917,774	+				-1.2
2,917,775	-				-2.6
2,917,775	-				+0.4
2,917,785	+				-1.0
2,917,917	+				-0.9
2,917,996	-				-1.0
2,918,013	+				-1.7