Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1742

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
2,146,946	+				-2.8
2,146,947	-				-1.0
2,146,949	+				-2.0
2,146,949	+				-0.3
2,146,974	+				-1.3
2,146,979	-				-1.6
2,147,030	-				-1.1
2,147,067	+				-1.3
2,147,069	+				-0.5
2,147,069	+				-1.9
2,147,121	+				-0.8
2,147,122	-				+1.2
2,147,159	+				-2.0
2,147,182	+				-2.7
2,147,201	+				-0.8
2,147,245	+		BT1740	0.14	-1.9
2,147,246	-		BT1740	0.15	-2.3
2,147,246	-		BT1740	0.15	-0.6
2,147,248	+		BT1740	0.15	-1.3
2,147,250	+		BT1740	0.15	-1.2
2,147,402	-		BT1740	0.47	-1.5
2,147,402	-		BT1740	0.47	-2.3
2,147,421	+		BT1740	0.51	-1.3
2,147,429	-		BT1740	0.52	-1.0
2,147,498	+		BT1740	0.66	-4.0
2,147,543	+		BT1740	0.76	-3.3
2,147,546	-		BT1740	0.76	-1.3
2,147,616	+				-1.9
2,147,752	+		BT1741	0.38	-2.2
2,147,752	+		BT1741	0.38	-0.0
2,147,826	-		BT1741	0.70	+1.8
2,147,846	+		BT1741	0.78	-1.5
2,147,847	-		BT1741	0.79	-0.1
2,147,934	-				+1.0
2,147,948	+				-1.7
2,147,949	-				-2.0
2,147,949	-				-1.2
2,147,959	-				+2.0
2,147,989	-				-1.2
2,148,021	-				+0.2
2,148,021	-				-0.0
2,148,021	-				-0.8
2,148,024	+				-1.7
2,148,024	+				-2.5
2,148,025	-				+0.1
2,148,025	-				-1.9
2,148,025	-				+1.9
2,148,025	-				-0.3
2,148,026	+				-1.7
2,148,027	-				-2.0
2,148,027	-				+0.1
2,148,028	+				+0.7
2,148,029	-				-2.3
2,148,054	+		BT1742	0.11	-0.3
2,148,055	-		BT1742	0.11	-0.7
2,148,113	+		BT1742	0.15	-0.6
2,148,177	-		BT1742	0.20	+0.6
2,148,200	+		BT1742	0.22	-2.1
2,148,201	-		BT1742	0.22	-0.4
2,148,201	-		BT1742	0.22	-1.4
2,148,218	+		BT1742	0.23	-0.4
2,148,223	-		BT1742	0.23	-2.0
2,148,223	-		BT1742	0.23	+0.1
2,148,240	-		BT1742	0.24	+0.6
2,148,248	-		BT1742	0.25	-0.6
2,148,323	+		BT1742	0.30	-1.4
2,148,380	+		BT1742	0.34	+0.4
2,148,380	+		BT1742	0.34	-2.4
2,148,398	+		BT1742	0.35	-1.5
2,148,461	-		BT1742	0.40	-0.4
2,148,481	-		BT1742	0.41	-1.9
2,148,481	-		BT1742	0.41	+2.0
2,148,518	-		BT1742	0.44	-0.4
2,148,662	+		BT1742	0.54	-2.2
2,148,663	-		BT1742	0.54	-1.9
2,148,679	+		BT1742	0.55	-2.1
2,148,710	-		BT1742	0.57	-0.4
2,148,750	+		BT1742	0.60	-2.7
2,148,751	-		BT1742	0.60	+1.3
2,148,817	+		BT1742	0.65	-0.0
2,148,817	+		BT1742	0.65	-2.7
2,148,818	-		BT1742	0.65	-1.0
2,148,819	+		BT1742	0.65	-0.6
2,148,819	+		BT1742	0.65	-0.8
2,148,819	+		BT1742	0.65	-0.8
2,148,879	+		BT1742	0.69	-2.7
2,148,879	+		BT1742	0.69	-2.6
2,148,948	+		BT1742	0.74	-1.6
2,148,949	-		BT1742	0.74	-0.0
2,149,014	+		BT1742	0.78	-1.8
2,149,062	-		BT1742	0.82	-0.0
2,149,071	+		BT1742	0.82	-2.6
2,149,081	-		BT1742	0.83	-0.6
2,149,081	-		BT1742	0.83	+1.0
2,149,085	-		BT1742	0.83	+2.4
2,149,179	-		BT1742	0.90	-1.4
2,149,191	-				-1.6
2,149,191	-				-2.1
2,149,192	+				-0.8
2,149,198	-				-1.5
2,149,198	-				-2.1
2,149,214	+				-1.0
2,149,215	-				-1.2
2,149,271	-				-2.3
2,149,271	-				-0.4
2,149,311	-				-0.4
2,149,311	-				-0.8
2,149,337	+				-1.2
2,149,412	+				-0.8
2,149,494	-				-0.3
2,149,517	+				-1.8
2,149,520	+				-0.3
2,149,521	-				+1.0
2,149,521	-				-0.8
2,149,522	+				-0.4
2,149,523	-				-1.7
2,149,537	-				+0.4
2,149,538	+				-1.8
2,149,538	+				-0.3
2,149,539	-				-1.8
2,149,697	-				+1.5
2,149,712	+		BT1743	0.10	-0.2
2,149,732	+		BT1743	0.12	-1.7
2,149,732	+		BT1743	0.12	-0.8
2,149,736	+		BT1743	0.12	-0.3
2,149,843	+		BT1743	0.19	-0.8
2,149,844	-		BT1743	0.19	-0.8
2,149,936	-		BT1743	0.25	-0.3
2,149,990	+		BT1743	0.29	-1.6
2,149,990	+		BT1743	0.29	-0.0
2,149,991	-		BT1743	0.29	-1.9
2,149,997	+		BT1743	0.29	-2.2
2,150,012	+		BT1743	0.30	-3.3
2,150,052	+		BT1743	0.33	+0.7
2,150,063	+		BT1743	0.33	-0.8
2,150,224	-		BT1743	0.44	-0.0
2,150,233	+		BT1743	0.45	-1.2