Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1385

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
1,711,570	-		BT1383	0.60	+1.9
1,711,625	-		BT1383	0.67	+0.6
1,711,715	+		BT1383	0.77	-1.1
1,711,761	+		BT1383	0.83	+0.3
1,711,762	-		BT1383	0.83	+0.1
1,711,762	-		BT1383	0.83	+0.3
1,711,780	+		BT1383	0.85	+0.3
1,711,846	-				-0.7
1,711,848	-				-0.1
1,711,848	-				-1.4
1,711,933	+				-3.2
1,711,945	+				+0.2
1,711,946	-				+1.3
1,711,946	-				-0.7
1,712,007	+				-1.3
1,712,028	+				-0.8
1,712,046	+				+0.9
1,712,094	+				+0.1
1,712,225	-		BT1384	0.40	+0.6
1,712,225	-		BT1384	0.40	-0.6
1,712,275	+		BT1384	0.52	+0.7
1,712,525	-				-1.1
1,712,525	-				-1.1
1,712,696	-		BT1385	0.14	-0.4
1,712,697	+		BT1385	0.14	-1.5
1,712,743	-		BT1385	0.20	-0.1
1,712,743	-		BT1385	0.20	+0.2
1,712,935	+		BT1385	0.42	-0.1
1,712,937	+		BT1385	0.42	+1.2
1,712,988	+		BT1385	0.48	+0.3
1,713,050	-		BT1385	0.55	+1.3
1,713,192	-		BT1385	0.71	+1.1
1,713,318	+		BT1385	0.85	+1.7
1,713,319	-		BT1385	0.85	-0.8
1,713,319	-		BT1385	0.85	-0.7
1,713,322	-		BT1385	0.86	+0.3
1,713,409	+				-0.9
1,713,416	-				-0.7
1,713,463	+				-1.2
1,713,463	+				+0.3
1,713,529	-				-0.1
1,713,542	+				-3.2
1,713,542	+				-2.1
1,713,542	+				-0.7
1,713,543	-				-1.2
1,713,543	-				-1.5
1,713,553	-				-2.1
1,713,554	+				+0.7
1,713,574	-				-2.6
1,713,628	-		BT1386	0.10	+0.9
1,713,680	+		BT1386	0.20	-1.3
1,713,713	-		BT1386	0.26	-0.7
1,713,832	-		BT1386	0.47	-0.8
1,713,832	-		BT1386	0.47	-2.6
1,713,835	-		BT1386	0.48	-0.9
1,713,872	-		BT1386	0.55	-1.2
1,713,877	+		BT1386	0.56	-2.0
1,713,877	+		BT1386	0.56	-0.9
1,713,878	-		BT1386	0.56	-1.1
1,713,883	-		BT1386	0.57	-2.1
1,713,890	+		BT1386	0.58	+0.3
1,713,890	+		BT1386	0.58	-0.4
1,713,892	+		BT1386	0.58	-0.5
1,713,893	-		BT1386	0.58	-0.4
1,713,947	-		BT1386	0.68	-0.9
1,713,953	-		BT1386	0.69	-1.4
1,713,978	+		BT1386	0.74	-1.3
1,713,979	-		BT1386	0.74	+1.5
1,713,979	-		BT1386	0.74	-0.3
1,714,033	-		BT1386	0.84	+0.3
1,714,111	-				-1.2
1,714,120	+				-0.7
1,714,138	-				-2.0
1,714,142	+				-1.9
1,714,169	+				-1.5
1,714,214	-				-1.4
1,714,280	+				-1.5
1,714,280	+				-2.1
1,714,300	-		BT1387	0.10	-0.1
1,714,300	-		BT1387	0.10	-2.2
1,714,396	+		BT1387	0.17	-0.1
1,714,442	+		BT1387	0.21	-2.0