Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2824

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2822 and Psest_2823 are separated by 33 nucleotidesPsest_2823 and Psest_2824 overlap by 4 nucleotidesPsest_2824 and Psest_2825 are separated by 168 nucleotides Psest_2822: Psest_2822 - phosphopyruvate hydratase, at 3,009,078 to 3,010,367 _2822 Psest_2823: Psest_2823 - 3-deoxy-8-phosphooctulonate synthase, at 3,010,401 to 3,011,246 _2823 Psest_2824: Psest_2824 - CTP synthase, at 3,011,243 to 3,012,874 _2824 Psest_2825: Psest_2825 - tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain, at 3,013,043 to 3,014,332 _2825 Position (kb) 3011 3012 3013Strain fitness (log2 ratio) -1 0 1 2 3at 3010.389 kb on - strandat 3010.389 kb on - strandat 3010.389 kb on - strandat 3012.898 kb on - strandat 3012.993 kb on - strandat 3013.009 kb on - strandat 3013.009 kb on - strandat 3013.009 kb on - strandat 3013.045 kb on - strandat 3013.045 kb on - strandat 3013.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,010,389 - -0.5
3,010,389 - -0.3
3,010,389 - +0.2
3,012,898 - -0.9
3,012,993 - +1.8
3,013,009 - +1.7
3,013,009 - +3.0
3,013,009 - -0.9
3,013,045 - -0.8
3,013,045 - +0.6
3,013,045 - -0.1

Or see this region's nucleotide sequence