Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1296 and Psest_1297 are separated by 177 nucleotides Psest_1297 and Psest_1298 are separated by 147 nucleotides Psest_1298 and Psest_1299 are separated by 75 nucleotides Psest_1299 and Psest_1300 are separated by 44 nucleotides Psest_1300 and Psest_1301 are separated by 48 nucleotides Psest_1301 and Psest_1302 are separated by 192 nucleotides
Psest_1296: Psest_1296 - excinuclease ABC, B subunit, at 1,400,569 to 1,402,584
_1296
Psest_1297: Psest_1297 - glutamyl-tRNA synthetase, bacterial family, at 1,402,762 to 1,404,243
_1297
Psest_1298: Psest_1298 - tRNA_Ala_GGC, at 1,404,391 to 1,404,466
_1298
Psest_1299: Psest_1299 - tRNA_Glu_TTC, at 1,404,542 to 1,404,617
_1299
Psest_1300: Psest_1300 - tRNA_Ala_GGC, at 1,404,662 to 1,404,737
_1300
Psest_1301: Psest_1301 - tRNA_Glu_TTC, at 1,404,786 to 1,404,861
_1301
Psest_1302: Psest_1302 - Predicted thioesterase, at 1,405,054 to 1,405,503
_1302
Position (kb)
1402
1403
1404
1405 Strain fitness (log2 ratio)
-1
0
1 at 1401.955 kb on + strand, within Psest_1296 at 1401.985 kb on + strand, within Psest_1296 at 1402.219 kb on + strand, within Psest_1296 at 1402.232 kb on + strand, within Psest_1296 at 1404.234 kb on + strand at 1404.297 kb on - strand at 1404.307 kb on - strand at 1404.619 kb on + strand at 1404.655 kb on + strand at 1404.655 kb on + strand at 1405.017 kb on + strand at 1405.017 kb on + strand at 1405.018 kb on - strand at 1405.135 kb on - strand, within Psest_1302 at 1405.144 kb on + strand, within Psest_1302 at 1405.144 kb on + strand, within Psest_1302 at 1405.145 kb on - strand, within Psest_1302 at 1405.211 kb on - strand, within Psest_1302 at 1405.211 kb on - strand, within Psest_1302 at 1405.242 kb on - strand, within Psest_1302
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,401,955 + Psest_1296 0.69 -0.1 1,401,985 + Psest_1296 0.70 +0.9 1,402,219 + Psest_1296 0.82 +1.6 1,402,232 + Psest_1296 0.82 -0.7 1,404,234 + +0.1 1,404,297 - +0.1 1,404,307 - +0.7 1,404,619 + -0.9 1,404,655 + -1.3 1,404,655 + +0.0 1,405,017 + -0.6 1,405,017 + -0.2 1,405,018 - -0.3 1,405,135 - Psest_1302 0.18 -0.3 1,405,144 + Psest_1302 0.20 +0.2 1,405,144 + Psest_1302 0.20 +0.7 1,405,145 - Psest_1302 0.20 +0.5 1,405,211 - Psest_1302 0.35 -0.2 1,405,211 - Psest_1302 0.35 +0.3 1,405,242 - Psest_1302 0.42 -0.8
Or see this region's nucleotide sequence