Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3857 and Psest_3858 are separated by 86 nucleotides Psest_3858 and Psest_3859 are separated by 103 nucleotides Psest_3859 and Psest_3860 are separated by 10 nucleotides Psest_3860 and Psest_3861 are separated by 159 nucleotides
Psest_3857: Psest_3857 - ATPases involved in chromosome partitioning, at 4,028,939 to 4,029,712
_3857
Psest_3858: Psest_3858 - thymidylate synthase, at 4,029,799 to 4,030,593
_3858
Psest_3859: Psest_3859 - prolipoprotein diacylglyceryl transferase, at 4,030,697 to 4,031,497
_3859
Psest_3860: Psest_3860 - Predicted permeases, at 4,031,508 to 4,032,290
_3860
Psest_3861: Psest_3861 - Uncharacterized conserved protein, at 4,032,450 to 4,033,206
_3861
Position (kb)
4030
4031
4032 Strain fitness (log2 ratio)
-2
-1
0
1 at 4029.748 kb on - strand at 4029.748 kb on - strand at 4030.643 kb on - strand at 4030.643 kb on - strand at 4030.643 kb on - strand at 4030.646 kb on - strand at 4030.646 kb on - strand at 4030.646 kb on - strand at 4030.646 kb on - strand at 4031.653 kb on + strand, within Psest_3860 at 4031.653 kb on + strand, within Psest_3860 at 4031.653 kb on + strand, within Psest_3860 at 4031.653 kb on + strand, within Psest_3860 at 4031.801 kb on - strand, within Psest_3860 at 4031.934 kb on + strand, within Psest_3860 at 4032.274 kb on + strand at 4032.274 kb on + strand at 4032.274 kb on + strand at 4032.275 kb on - strand at 4032.275 kb on - strand at 4032.275 kb on - strand at 4032.275 kb on - strand at 4032.310 kb on + strand at 4032.415 kb on + strand at 4032.415 kb on + strand at 4032.416 kb on - strand at 4032.439 kb on + strand at 4032.440 kb on - strand at 4032.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 4,029,748 - +0.1 4,029,748 - -1.2 4,030,643 - -0.1 4,030,643 - +0.7 4,030,643 - +0.5 4,030,646 - -0.1 4,030,646 - +0.2 4,030,646 - -0.9 4,030,646 - -0.2 4,031,653 + Psest_3860 0.19 -1.8 4,031,653 + Psest_3860 0.19 -1.2 4,031,653 + Psest_3860 0.19 -1.1 4,031,653 + Psest_3860 0.19 -0.9 4,031,801 - Psest_3860 0.37 -0.5 4,031,934 + Psest_3860 0.54 -2.6 4,032,274 + +1.1 4,032,274 + +1.3 4,032,274 + +0.3 4,032,275 - -0.2 4,032,275 - +1.3 4,032,275 - -0.1 4,032,275 - -1.1 4,032,310 + -0.7 4,032,415 + +0.9 4,032,415 + -0.4 4,032,416 - +1.2 4,032,439 + +0.4 4,032,440 - -0.0 4,032,440 - +0.3
Or see this region's nucleotide sequence