Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0708 and Psest_0709 are separated by 52 nucleotides Psest_0709 and Psest_0710 overlap by 4 nucleotides Psest_0710 and Psest_0711 are separated by 166 nucleotides
Psest_0708: Psest_0708 - outer membrane assembly lipoprotein YfiO, at 777,283 to 778,272
_0708
Psest_0709: Psest_0709 - pseudouridine synthase, RluA family, at 778,325 to 779,452
_0709
Psest_0710: Psest_0710 - uncharacterized protein, YfiH family, at 779,449 to 780,186
_0710
Psest_0711: Psest_0711 - ATP-dependent chaperone ClpB, at 780,353 to 782,917
_0711
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1
2 at 777.343 kb on + strand at 777.409 kb on + strand, within Psest_0708 at 777.555 kb on - strand, within Psest_0708 at 777.555 kb on - strand, within Psest_0708 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.477 kb on + strand, within Psest_0709 at 778.477 kb on + strand, within Psest_0709 at 778.478 kb on - strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.730 kb on - strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.749 kb on - strand, within Psest_0709 at 778.825 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.182 kb on + strand, within Psest_0709 at 779.183 kb on - strand, within Psest_0709 at 779.244 kb on - strand, within Psest_0709 at 779.244 kb on - strand, within Psest_0709 at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.303 kb on - strand at 780.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 777,343 + +0.6 777,409 + Psest_0708 0.13 +1.1 777,555 - Psest_0708 0.27 +0.7 777,555 - Psest_0708 0.27 +2.1 778,467 + Psest_0709 0.13 +0.1 778,467 + Psest_0709 0.13 +0.2 778,467 + Psest_0709 0.13 -0.4 778,467 + Psest_0709 0.13 -0.3 778,468 - Psest_0709 0.13 -1.0 778,468 - Psest_0709 0.13 -2.6 778,468 - Psest_0709 0.13 +0.5 778,477 + Psest_0709 0.13 -1.5 778,477 + Psest_0709 0.13 -0.6 778,478 - Psest_0709 0.14 -0.4 778,629 + Psest_0709 0.27 -1.1 778,629 + Psest_0709 0.27 -2.2 778,629 + Psest_0709 0.27 -0.9 778,629 + Psest_0709 0.27 +1.9 778,630 - Psest_0709 0.27 -0.4 778,630 - Psest_0709 0.27 -0.4 778,630 - Psest_0709 0.27 -1.3 778,730 - Psest_0709 0.36 -2.4 778,748 + Psest_0709 0.38 -1.5 778,748 + Psest_0709 0.38 -0.5 778,748 + Psest_0709 0.38 -1.6 778,749 - Psest_0709 0.38 -0.6 778,825 + Psest_0709 0.44 +0.1 778,997 + Psest_0709 0.60 -0.3 778,997 + Psest_0709 0.60 -0.6 778,997 + Psest_0709 0.60 -2.0 778,997 + Psest_0709 0.60 -0.6 778,998 - Psest_0709 0.60 -1.5 778,998 - Psest_0709 0.60 +0.0 778,998 - Psest_0709 0.60 -1.3 778,998 - Psest_0709 0.60 -0.0 778,998 - Psest_0709 0.60 -0.8 778,998 - Psest_0709 0.60 -1.3 779,080 + Psest_0709 0.67 -0.4 779,080 + Psest_0709 0.67 -0.5 779,080 + Psest_0709 0.67 -0.4 779,182 + Psest_0709 0.76 -0.9 779,183 - Psest_0709 0.76 -1.1 779,244 - Psest_0709 0.81 -0.4 779,244 - Psest_0709 0.81 -0.8 780,282 + +0.5 780,282 + +0.4 780,282 + -1.7 780,282 + +1.6 780,282 + +1.2 780,282 + -0.2 780,282 + -0.6 780,282 + -0.8 780,282 + +1.2 780,282 + -0.2 780,282 + +0.8 780,282 + -0.1 780,282 + +0.8 780,282 + -0.3 780,283 - -1.4 780,283 - -0.1 780,283 - -0.2 780,283 - +0.4 780,283 - -0.1 780,283 - -0.3 780,283 - -2.6 780,283 - -0.2 780,283 - -0.1 780,283 - -0.3 780,283 - -0.0 780,283 - -0.4 780,283 - +0.2 780,283 - +0.8 780,283 - -1.2 780,283 - -0.5 780,302 + +0.1 780,302 + -2.3 780,302 + -0.6 780,302 + -1.2 780,302 + +1.0 780,303 - +0.0 780,334 + -0.6
Or see this region's nucleotide sequence