Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0411

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0409 and Psest_0410 are separated by 71 nucleotidesPsest_0410 and Psest_0411 are separated by 93 nucleotidesPsest_0411 and Psest_0412 are separated by 107 nucleotides Psest_0409: Psest_0409 - Putative homoserine kinase type II (protein kinase fold), at 444,755 to 445,729 _0409 Psest_0410: Psest_0410 - Predicted amidophosphoribosyltransferases, at 445,801 to 446,505 _0410 Psest_0411: Psest_0411 - biotin synthetase, at 446,599 to 447,654 _0411 Psest_0412: Psest_0412 - 8-amino-7-oxononanoate synthase, at 447,762 to 448,940 _0412 Position (kb) 446 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 445.615 kb on - strand, within Psest_0409at 445.711 kb on + strandat 445.747 kb on - strandat 445.760 kb on + strandat 445.777 kb on + strandat 445.778 kb on - strandat 445.778 kb on - strandat 445.835 kb on + strandat 445.835 kb on + strandat 445.836 kb on - strandat 445.836 kb on - strandat 446.266 kb on - strand, within Psest_0410at 446.318 kb on + strand, within Psest_0410at 446.319 kb on - strand, within Psest_0410at 446.430 kb on + strand, within Psest_0410at 446.430 kb on + strand, within Psest_0410at 446.431 kb on - strand, within Psest_0410at 446.431 kb on - strand, within Psest_0410at 446.431 kb on - strand, within Psest_0410at 446.431 kb on - strand, within Psest_0410at 446.431 kb on - strand, within Psest_0410at 446.581 kb on + strandat 446.581 kb on + strandat 446.581 kb on + strandat 446.581 kb on + strandat 446.582 kb on - strandat 446.582 kb on - strandat 446.585 kb on + strandat 446.585 kb on + strandat 446.585 kb on + strandat 446.585 kb on + strandat 446.791 kb on + strand, within Psest_0411at 446.791 kb on + strand, within Psest_0411at 446.791 kb on + strand, within Psest_0411at 446.791 kb on + strand, within Psest_0411at 446.791 kb on + strand, within Psest_0411at 446.791 kb on + strand, within Psest_0411at 446.792 kb on - strand, within Psest_0411at 446.813 kb on - strand, within Psest_0411at 446.813 kb on - strand, within Psest_0411at 446.813 kb on - strand, within Psest_0411at 446.950 kb on + strand, within Psest_0411at 446.951 kb on - strand, within Psest_0411at 446.951 kb on - strand, within Psest_0411at 447.062 kb on - strand, within Psest_0411at 447.064 kb on + strand, within Psest_0411at 447.064 kb on + strand, within Psest_0411at 447.064 kb on + strand, within Psest_0411at 447.064 kb on + strand, within Psest_0411at 447.064 kb on + strand, within Psest_0411at 447.065 kb on - strand, within Psest_0411at 447.065 kb on - strand, within Psest_0411at 447.065 kb on - strand, within Psest_0411at 447.065 kb on - strand, within Psest_0411at 447.081 kb on + strand, within Psest_0411at 447.094 kb on + strand, within Psest_0411at 447.094 kb on + strand, within Psest_0411at 447.095 kb on - strand, within Psest_0411at 447.095 kb on - strand, within Psest_0411at 447.095 kb on - strand, within Psest_0411at 447.097 kb on + strand, within Psest_0411at 447.124 kb on + strand, within Psest_0411at 447.124 kb on + strand, within Psest_0411at 447.124 kb on + strand, within Psest_0411at 447.152 kb on - strand, within Psest_0411at 447.152 kb on - strand, within Psest_0411at 447.152 kb on - strand, within Psest_0411at 447.152 kb on - strand, within Psest_0411at 447.152 kb on - strand, within Psest_0411at 447.152 kb on - strand, within Psest_0411at 447.152 kb on - strand, within Psest_0411at 447.637 kb on + strandat 447.637 kb on + strandat 447.637 kb on + strandat 447.637 kb on + strandat 447.637 kb on + strandat 447.637 kb on + strandat 447.638 kb on - strandat 447.640 kb on - strandat 447.814 kb on - strandat 447.900 kb on + strand, within Psest_0412at 447.901 kb on - strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.081 kb on - strand, within Psest_0412at 448.081 kb on - strand, within Psest_0412at 448.081 kb on - strand, within Psest_0412at 448.081 kb on - strand, within Psest_0412at 448.082 kb on + strand, within Psest_0412at 448.083 kb on - strand, within Psest_0412at 448.282 kb on + strand, within Psest_0412at 448.545 kb on + strand, within Psest_0412at 448.545 kb on + strand, within Psest_0412at 448.545 kb on + strand, within Psest_0412at 448.545 kb on + strand, within Psest_0412at 448.546 kb on - strand, within Psest_0412at 448.546 kb on - strand, within Psest_0412at 448.546 kb on - strand, within Psest_0412at 448.551 kb on + strand, within Psest_0412at 448.551 kb on + strand, within Psest_0412at 448.551 kb on + strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.613 kb on + strand, within Psest_0412at 448.614 kb on - strand, within Psest_0412

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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445,615 - Psest_0409 0.88 +0.0
445,711 + -0.3
445,747 - -0.6
445,760 + +0.3
445,777 + -1.1
445,778 - +0.5
445,778 - -0.0
445,835 + -0.1
445,835 + -0.3
445,836 - -0.5
445,836 - +0.3
446,266 - Psest_0410 0.66 -0.3
446,318 + Psest_0410 0.73 +0.0
446,319 - Psest_0410 0.73 -0.2
446,430 + Psest_0410 0.89 +1.3
446,430 + Psest_0410 0.89 -0.9
446,431 - Psest_0410 0.89 +1.3
446,431 - Psest_0410 0.89 +0.7
446,431 - Psest_0410 0.89 +0.8
446,431 - Psest_0410 0.89 +0.5
446,431 - Psest_0410 0.89 -0.6
446,581 + -0.3
446,581 + +0.8
446,581 + -0.4
446,581 + +2.0
446,582 - -1.7
446,582 - +0.2
446,585 + +0.1
446,585 + +0.1
446,585 + +0.0
446,585 + -0.2
446,791 + Psest_0411 0.18 -1.8
446,791 + Psest_0411 0.18 -1.2
446,791 + Psest_0411 0.18 -1.8
446,791 + Psest_0411 0.18 -0.9
446,791 + Psest_0411 0.18 -1.2
446,791 + Psest_0411 0.18 -1.1
446,792 - Psest_0411 0.18 -2.0
446,813 - Psest_0411 0.20 -3.3
446,813 - Psest_0411 0.20 -0.8
446,813 - Psest_0411 0.20 -1.2
446,950 + Psest_0411 0.33 -0.6
446,951 - Psest_0411 0.33 -1.3
446,951 - Psest_0411 0.33 -2.1
447,062 - Psest_0411 0.44 -3.1
447,064 + Psest_0411 0.44 -2.0
447,064 + Psest_0411 0.44 -1.9
447,064 + Psest_0411 0.44 -1.7
447,064 + Psest_0411 0.44 -1.8
447,064 + Psest_0411 0.44 -1.7
447,065 - Psest_0411 0.44 -1.8
447,065 - Psest_0411 0.44 -1.9
447,065 - Psest_0411 0.44 -2.0
447,065 - Psest_0411 0.44 -1.9
447,081 + Psest_0411 0.46 +0.3
447,094 + Psest_0411 0.47 -0.9
447,094 + Psest_0411 0.47 -1.5
447,095 - Psest_0411 0.47 -2.7
447,095 - Psest_0411 0.47 -4.2
447,095 - Psest_0411 0.47 -0.8
447,097 + Psest_0411 0.47 -2.1
447,124 + Psest_0411 0.50 -2.8
447,124 + Psest_0411 0.50 -1.9
447,124 + Psest_0411 0.50 -2.1
447,152 - Psest_0411 0.52 -2.7
447,152 - Psest_0411 0.52 -1.1
447,152 - Psest_0411 0.52 -0.6
447,152 - Psest_0411 0.52 -1.2
447,152 - Psest_0411 0.52 -1.5
447,152 - Psest_0411 0.52 -1.9
447,152 - Psest_0411 0.52 -2.2
447,637 + +0.6
447,637 + -1.2
447,637 + -0.0
447,637 + +0.3
447,637 + -0.4
447,637 + -0.3
447,638 - -1.2
447,640 - +0.4
447,814 - -2.4
447,900 + Psest_0412 0.12 -1.1
447,901 - Psest_0412 0.12 -2.3
448,080 + Psest_0412 0.27 -1.4
448,080 + Psest_0412 0.27 -1.7
448,080 + Psest_0412 0.27 -1.0
448,080 + Psest_0412 0.27 -1.3
448,080 + Psest_0412 0.27 -2.5
448,080 + Psest_0412 0.27 -3.3
448,080 + Psest_0412 0.27 -0.7
448,081 - Psest_0412 0.27 -1.6
448,081 - Psest_0412 0.27 -1.7
448,081 - Psest_0412 0.27 -0.8
448,081 - Psest_0412 0.27 -2.6
448,082 + Psest_0412 0.27 -1.7
448,083 - Psest_0412 0.27 -0.9
448,282 + Psest_0412 0.44 -1.7
448,545 + Psest_0412 0.66 -2.0
448,545 + Psest_0412 0.66 -1.4
448,545 + Psest_0412 0.66 -1.7
448,545 + Psest_0412 0.66 -0.7
448,546 - Psest_0412 0.66 -0.1
448,546 - Psest_0412 0.66 -1.6
448,546 - Psest_0412 0.66 -3.4
448,551 + Psest_0412 0.67 -0.2
448,551 + Psest_0412 0.67 +0.3
448,551 + Psest_0412 0.67 -0.0
448,552 - Psest_0412 0.67 -2.4
448,552 - Psest_0412 0.67 -3.5
448,552 - Psest_0412 0.67 -1.0
448,552 - Psest_0412 0.67 -1.7
448,552 - Psest_0412 0.67 -0.7
448,552 - Psest_0412 0.67 -1.2
448,552 - Psest_0412 0.67 +1.2
448,552 - Psest_0412 0.67 -3.5
448,552 - Psest_0412 0.67 -0.8
448,552 - Psest_0412 0.67 -2.1
448,552 - Psest_0412 0.67 -1.2
448,552 - Psest_0412 0.67 -1.5
448,552 - Psest_0412 0.67 -3.2
448,552 - Psest_0412 0.67 -1.7
448,552 - Psest_0412 0.67 -1.1
448,613 + Psest_0412 0.72 -2.3
448,614 - Psest_0412 0.72 +0.5

Or see this region's nucleotide sequence