Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3550

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3548 and Psest_3549 overlap by 4 nucleotidesPsest_3549 and Psest_3550 are separated by 59 nucleotidesPsest_3550 and Psest_3551 are separated by 11 nucleotides Psest_3548: Psest_3548 - transcription antitermination factor NusB, at 3,727,746 to 3,728,231 _3548 Psest_3549: Psest_3549 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,728,228 to 3,728,704 _3549 Psest_3550: Psest_3550 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,728,764 to 3,729,843 _3550 Psest_3551: Psest_3551 - riboflavin synthase, alpha subunit, at 3,729,855 to 3,730,517 _3551 Position (kb) 3728 3729 3730Strain fitness (log2 ratio) -1 0 1at 3728.781 kb on - strandat 3728.781 kb on - strandat 3728.786 kb on - strandat 3728.786 kb on - strandat 3728.786 kb on - strandat 3728.786 kb on - strandat 3729.044 kb on - strand, within Psest_3550at 3729.172 kb on - strand, within Psest_3550at 3729.172 kb on - strand, within Psest_3550at 3729.172 kb on - strand, within Psest_3550at 3730.587 kb on - strandat 3730.587 kb on - strandat 3730.661 kb on - strandat 3730.661 kb on - strandat 3730.661 kb on - strandat 3730.661 kb on - strandat 3730.661 kb on - strandat 3730.724 kb on - strandat 3730.812 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
3,728,781 - -0.0
3,728,781 - +0.3
3,728,786 - -0.4
3,728,786 - -1.1
3,728,786 - +0.5
3,728,786 - -0.2
3,729,044 - Psest_3550 0.26 -1.7
3,729,172 - Psest_3550 0.38 -0.7
3,729,172 - Psest_3550 0.38 -0.7
3,729,172 - Psest_3550 0.38 +0.6
3,730,587 - -0.7
3,730,587 - +0.4
3,730,661 - -0.4
3,730,661 - -0.8
3,730,661 - +0.6
3,730,661 - +0.3
3,730,661 - +0.6
3,730,724 - -0.1
3,730,812 + -0.2

Or see this region's nucleotide sequence