Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3299

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3298 and Psest_3299 are separated by 169 nucleotidesPsest_3299 and Psest_3300 are separated by 178 nucleotides Psest_3298: Psest_3298 - histidinol dehydrogenase, at 3,465,393 to 3,466,703 _3298 Psest_3299: Psest_3299 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 3,466,873 to 3,467,505 _3299 Psest_3300: Psest_3300 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,467,684 to 3,468,949 _3300 Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3465.998 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.274 kb on - strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.298 kb on - strand, within Psest_3298at 3466.298 kb on - strand, within Psest_3298at 3466.338 kb on + strand, within Psest_3298at 3466.360 kb on + strand, within Psest_3298at 3466.360 kb on + strand, within Psest_3298at 3466.361 kb on - strand, within Psest_3298at 3466.361 kb on - strand, within Psest_3298at 3466.393 kb on + strand, within Psest_3298at 3466.789 kb on + strandat 3466.790 kb on - strandat 3466.795 kb on - strandat 3466.832 kb on - strandat 3466.832 kb on - strandat 3466.832 kb on - strandat 3467.026 kb on - strand, within Psest_3299at 3467.026 kb on - strand, within Psest_3299at 3467.096 kb on + strand, within Psest_3299at 3467.097 kb on - strand, within Psest_3299at 3467.136 kb on - strand, within Psest_3299at 3467.136 kb on - strand, within Psest_3299at 3467.138 kb on + strand, within Psest_3299at 3467.138 kb on + strand, within Psest_3299at 3467.139 kb on - strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.259 kb on - strand, within Psest_3299at 3467.261 kb on - strand, within Psest_3299at 3467.276 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.337 kb on + strand, within Psest_3299at 3467.338 kb on - strand, within Psest_3299at 3467.338 kb on - strand, within Psest_3299at 3467.338 kb on - strand, within Psest_3299at 3467.385 kb on + strand, within Psest_3299at 3467.576 kb on + strandat 3467.576 kb on + strandat 3467.577 kb on - strandat 3467.616 kb on + strandat 3467.619 kb on + strandat 3467.619 kb on + strandat 3467.619 kb on + strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,465,998 + Psest_3298 0.46 -3.3
3,466,039 + Psest_3298 0.49 -4.7
3,466,039 + Psest_3298 0.49 -4.4
3,466,039 + Psest_3298 0.49 -2.2
3,466,039 + Psest_3298 0.49 -2.6
3,466,039 + Psest_3298 0.49 -1.2
3,466,039 + Psest_3298 0.49 -3.8
3,466,039 + Psest_3298 0.49 -2.2
3,466,040 - Psest_3298 0.49 -1.4
3,466,040 - Psest_3298 0.49 -0.4
3,466,040 - Psest_3298 0.49 -4.6
3,466,040 - Psest_3298 0.49 -3.7
3,466,040 - Psest_3298 0.49 -2.5
3,466,274 - Psest_3298 0.67 -2.0
3,466,297 + Psest_3298 0.69 -3.6
3,466,297 + Psest_3298 0.69 -6.5
3,466,297 + Psest_3298 0.69 -2.3
3,466,297 + Psest_3298 0.69 -2.8
3,466,297 + Psest_3298 0.69 -3.2
3,466,298 - Psest_3298 0.69 -2.9
3,466,298 - Psest_3298 0.69 -1.9
3,466,338 + Psest_3298 0.72 -3.9
3,466,360 + Psest_3298 0.74 -1.7
3,466,360 + Psest_3298 0.74 -3.6
3,466,361 - Psest_3298 0.74 -4.3
3,466,361 - Psest_3298 0.74 -4.5
3,466,393 + Psest_3298 0.76 -3.1
3,466,789 + -2.8
3,466,790 - -1.4
3,466,795 - -0.3
3,466,832 - +0.3
3,466,832 - +0.0
3,466,832 - +0.1
3,467,026 - Psest_3299 0.24 -1.9
3,467,026 - Psest_3299 0.24 -2.5
3,467,096 + Psest_3299 0.35 -0.2
3,467,097 - Psest_3299 0.35 -3.6
3,467,136 - Psest_3299 0.42 -0.8
3,467,136 - Psest_3299 0.42 -3.8
3,467,138 + Psest_3299 0.42 -2.7
3,467,138 + Psest_3299 0.42 -2.9
3,467,139 - Psest_3299 0.42 -1.9
3,467,258 + Psest_3299 0.61 -3.8
3,467,258 + Psest_3299 0.61 -1.2
3,467,258 + Psest_3299 0.61 -3.2
3,467,258 + Psest_3299 0.61 -4.6
3,467,258 + Psest_3299 0.61 -1.6
3,467,258 + Psest_3299 0.61 -4.8
3,467,259 - Psest_3299 0.61 -2.3
3,467,261 - Psest_3299 0.61 -4.5
3,467,276 + Psest_3299 0.64 -3.2
3,467,333 + Psest_3299 0.73 -4.7
3,467,333 + Psest_3299 0.73 -2.6
3,467,333 + Psest_3299 0.73 -2.4
3,467,333 + Psest_3299 0.73 -3.9
3,467,333 + Psest_3299 0.73 -1.0
3,467,333 + Psest_3299 0.73 -2.4
3,467,333 + Psest_3299 0.73 -1.6
3,467,333 + Psest_3299 0.73 -3.1
3,467,333 + Psest_3299 0.73 -3.4
3,467,333 + Psest_3299 0.73 -3.2
3,467,333 + Psest_3299 0.73 -2.7
3,467,333 + Psest_3299 0.73 +0.6
3,467,333 + Psest_3299 0.73 -3.7
3,467,334 - Psest_3299 0.73 -2.8
3,467,334 - Psest_3299 0.73 -2.4
3,467,334 - Psest_3299 0.73 -2.6
3,467,334 - Psest_3299 0.73 -2.1
3,467,334 - Psest_3299 0.73 -2.6
3,467,334 - Psest_3299 0.73 -3.8
3,467,334 - Psest_3299 0.73 -2.9
3,467,334 - Psest_3299 0.73 -4.4
3,467,334 - Psest_3299 0.73 -4.4
3,467,334 - Psest_3299 0.73 -1.4
3,467,334 - Psest_3299 0.73 -4.9
3,467,334 - Psest_3299 0.73 -5.3
3,467,334 - Psest_3299 0.73 -2.9
3,467,334 - Psest_3299 0.73 -4.1
3,467,334 - Psest_3299 0.73 -3.8
3,467,334 - Psest_3299 0.73 -3.0
3,467,334 - Psest_3299 0.73 -3.5
3,467,334 - Psest_3299 0.73 -3.5
3,467,334 - Psest_3299 0.73 -3.7
3,467,337 + Psest_3299 0.73 -2.9
3,467,338 - Psest_3299 0.73 -3.0
3,467,338 - Psest_3299 0.73 -4.6
3,467,338 - Psest_3299 0.73 -2.6
3,467,385 + Psest_3299 0.81 -3.8
3,467,576 + -2.0
3,467,576 + -3.3
3,467,577 - -0.9
3,467,616 + -2.1
3,467,619 + -4.4
3,467,619 + -2.6
3,467,619 + -3.7
3,467,626 - -0.8
3,467,626 - +0.7
3,467,626 - +0.1
3,467,626 - +0.2
3,467,626 - +0.7
3,467,626 - +0.2
3,467,626 - +0.3

Or see this region's nucleotide sequence