Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0031

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0029 and Psest_0030 overlap by 4 nucleotidesPsest_0030 and Psest_0031 are separated by 12 nucleotidesPsest_0031 and Psest_0032 are separated by 246 nucleotides Psest_0029: Psest_0029 - shikimate 5-dehydrogenase, at 29,744 to 30,556 _0029 Psest_0030: Psest_0030 - Putative NADH-flavin reductase, at 30,553 to 31,164 _0030 Psest_0031: Psest_0031 - Uncharacterized conserved protein, at 31,177 to 31,485 _0031 Psest_0032: Psest_0032 - D-alanyl-D-alanine carboxypeptidase, at 31,732 to 32,670 _0032 Position (kb) 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 30.550 kb on + strandat 30.550 kb on + strandat 30.551 kb on - strandat 30.551 kb on - strandat 30.554 kb on + strandat 30.625 kb on - strand, within Psest_0030at 30.869 kb on + strand, within Psest_0030at 30.870 kb on - strand, within Psest_0030at 30.974 kb on - strand, within Psest_0030at 31.125 kb on - strandat 31.125 kb on - strandat 31.310 kb on + strand, within Psest_0031at 31.311 kb on - strand, within Psest_0031at 31.570 kb on + strandat 31.570 kb on + strandat 31.570 kb on + strandat 31.570 kb on + strandat 31.571 kb on - strandat 31.571 kb on - strandat 31.571 kb on - strandat 31.663 kb on - strandat 31.665 kb on - strandat 31.665 kb on - strandat 31.680 kb on - strandat 31.680 kb on - strandat 31.729 kb on - strandat 31.747 kb on - strandat 31.863 kb on + strand, within Psest_0032at 31.864 kb on - strand, within Psest_0032at 31.879 kb on + strand, within Psest_0032at 31.879 kb on + strand, within Psest_0032at 31.879 kb on + strand, within Psest_0032at 31.880 kb on - strand, within Psest_0032at 31.880 kb on - strand, within Psest_0032at 31.880 kb on - strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.194 kb on + strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.195 kb on - strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.197 kb on + strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.198 kb on - strand, within Psest_0032at 32.279 kb on - strand, within Psest_0032at 32.301 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.341 kb on + strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strandat 32.342 kb on - strand, within Psest_0032at 32.342 kb on - strand, within Psest_0032at 32.454 kb on + strand, within Psest_0032at 32.454 kb on + strand, within Psest_0032at 32.455 kb on - strand, within Psest_0032at 32.455 kb on - strand, within Psest_0032

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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30,550 + +0.6
30,550 + +0.2
30,551 - -1.9
30,551 - -0.6
30,554 + +0.8
30,625 - Psest_0030 0.12 -0.2
30,869 + Psest_0030 0.52 -0.4
30,870 - Psest_0030 0.52 +0.2
30,974 - Psest_0030 0.69 +0.4
31,125 - -0.2
31,125 - +0.2
31,310 + Psest_0031 0.43 -1.0
31,311 - Psest_0031 0.43 -1.2
31,570 + -0.1
31,570 + +0.8
31,570 + -0.7
31,570 + +0.5
31,571 - +0.9
31,571 - -0.2
31,571 - -0.2
31,663 - -0.5
31,665 - +0.6
31,665 - +0.7
31,680 - +0.7
31,680 - -0.3
31,729 - +0.3
31,747 - +1.0
31,863 + Psest_0032 0.14 +1.8
31,864 - Psest_0032 0.14 +0.3
31,879 + Psest_0032 0.16 +0.7
31,879 + Psest_0032 0.16 -0.2
31,879 + Psest_0032 0.16 +0.8
31,880 - Psest_0032 0.16 +0.6
31,880 - Psest_0032 0.16 +0.4
31,880 - Psest_0032 0.16 -0.4
32,194 + Psest_0032 0.49 +0.8
32,194 + Psest_0032 0.49 +0.1
32,194 + Psest_0032 0.49 +0.8
32,194 + Psest_0032 0.49 +0.3
32,194 + Psest_0032 0.49 +0.4
32,194 + Psest_0032 0.49 +0.7
32,195 - Psest_0032 0.49 -1.1
32,195 - Psest_0032 0.49 -0.0
32,195 - Psest_0032 0.49 +1.0
32,195 - Psest_0032 0.49 -0.5
32,195 - Psest_0032 0.49 +0.3
32,197 + Psest_0032 0.50 +0.4
32,197 + Psest_0032 0.50 -0.9
32,197 + Psest_0032 0.50 +1.3
32,197 + Psest_0032 0.50 +0.3
32,197 + Psest_0032 0.50 +0.5
32,197 + Psest_0032 0.50 +1.5
32,197 + Psest_0032 0.50 +0.2
32,197 + Psest_0032 0.50 +0.2
32,197 + Psest_0032 0.50 +0.8
32,198 - Psest_0032 0.50 +1.4
32,198 - Psest_0032 0.50 -0.3
32,198 - Psest_0032 0.50 +1.3
32,198 - Psest_0032 0.50 +1.2
32,198 - Psest_0032 0.50 +1.3
32,198 - Psest_0032 0.50 -1.0
32,198 - Psest_0032 0.50 +0.2
32,279 - Psest_0032 0.58 +0.1
32,301 + Psest_0032 0.61 -0.1
32,341 + Psest_0032 0.65 +0.5
32,341 + Psest_0032 0.65 +0.2
32,341 + Psest_0032 0.65 +0.1
32,341 + Psest_0032 0.65 -0.4
32,341 + Psest_0032 0.65 +1.3
32,341 + Psest_0032 0.65 +0.3
32,342 - Psest_0032 0.65 +0.3
32,342 - Psest_0032 0.65 +0.4
32,342 - Psest_0032 0.65 +1.0
32,342 - Psest_0032 0.65 -0.4
32,342 - Psest_0032 0.65 +1.0
32,342 - Psest_0032 0.65 -0.5
32,342 - Psest_0032 0.65 -0.4
32,342 - Psest_0032 0.65 -0.2
32,342 - +0.3
32,342 - Psest_0032 0.65 +0.2
32,342 - Psest_0032 0.65 +1.5
32,454 + Psest_0032 0.77 +0.4
32,454 + Psest_0032 0.77 +0.2
32,455 - Psest_0032 0.77 -0.3
32,455 - Psest_0032 0.77 +0.5

Or see this region's nucleotide sequence