Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0027 and Psest_0028 are separated by 152 nucleotides Psest_0028 and Psest_0029 are separated by 43 nucleotides Psest_0029 and Psest_0030 overlap by 4 nucleotides
Psest_0027: Psest_0027 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 27,653 to 28,630
_0027
Psest_0028: Psest_0028 - Coproporphyrinogen III oxidase, at 28,783 to 29,700
_0028
Psest_0029: Psest_0029 - shikimate 5-dehydrogenase, at 29,744 to 30,556
_0029
Psest_0030: Psest_0030 - Putative NADH-flavin reductase, at 30,553 to 31,164
_0030
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.825 kb on + strand, within Psest_0027 at 27.990 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.066 kb on + strand, within Psest_0027 at 28.243 kb on - strand, within Psest_0027 at 28.243 kb on - strand, within Psest_0027 at 28.372 kb on - strand, within Psest_0027 at 28.477 kb on - strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.495 kb on - strand, within Psest_0027 at 28.495 kb on - strand, within Psest_0027 at 28.703 kb on + strand at 28.703 kb on + strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.750 kb on - strand at 28.813 kb on + strand at 28.813 kb on + strand at 28.813 kb on + strand at 29.086 kb on + strand, within Psest_0028 at 29.087 kb on - strand, within Psest_0028 at 29.186 kb on - strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.503 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.524 kb on + strand, within Psest_0028 at 29.611 kb on + strand at 29.660 kb on - strand at 29.660 kb on - strand at 30.550 kb on + strand at 30.550 kb on + strand at 30.551 kb on - strand at 30.551 kb on - strand at 30.554 kb on + strand at 30.625 kb on - strand, within Psest_0030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 27,825 + Psest_0027 0.18 -1.4 27,990 + Psest_0027 0.34 +0.2 28,040 + Psest_0027 0.40 -0.1 28,040 + Psest_0027 0.40 -0.1 28,040 + Psest_0027 0.40 -0.2 28,040 + Psest_0027 0.40 -0.1 28,040 + Psest_0027 0.40 -0.7 28,041 - Psest_0027 0.40 -0.6 28,041 - Psest_0027 0.40 -1.5 28,041 - Psest_0027 0.40 -0.2 28,041 - Psest_0027 0.40 +2.1 28,041 - Psest_0027 0.40 +0.6 28,041 - Psest_0027 0.40 +0.4 28,041 - Psest_0027 0.40 -0.4 28,041 - Psest_0027 0.40 -1.0 28,041 - Psest_0027 0.40 +0.2 28,041 - Psest_0027 0.40 -0.0 28,041 - Psest_0027 0.40 +0.3 28,066 + Psest_0027 0.42 +1.2 28,243 - Psest_0027 0.60 +0.2 28,243 - Psest_0027 0.60 -0.1 28,372 - Psest_0027 0.74 +0.3 28,477 - Psest_0027 0.84 +0.4 28,494 + Psest_0027 0.86 -1.2 28,494 + Psest_0027 0.86 -0.2 28,494 + Psest_0027 0.86 -0.9 28,494 + Psest_0027 0.86 +0.2 28,494 + Psest_0027 0.86 +0.6 28,495 - Psest_0027 0.86 +0.1 28,495 - Psest_0027 0.86 +0.9 28,703 + +0.6 28,703 + -0.5 28,704 - +0.1 28,704 - +0.1 28,704 - -1.7 28,704 - +0.9 28,704 - +0.4 28,750 - +0.1 28,813 + -0.2 28,813 + -0.2 28,813 + +1.0 29,086 + Psest_0028 0.33 -0.6 29,087 - Psest_0028 0.33 +0.8 29,186 - Psest_0028 0.44 -0.6 29,410 + Psest_0028 0.68 -1.1 29,410 + Psest_0028 0.68 +0.6 29,410 + Psest_0028 0.68 +0.1 29,503 + Psest_0028 0.78 +0.1 29,512 + Psest_0028 0.79 -1.1 29,512 + Psest_0028 0.79 +0.5 29,512 + Psest_0028 0.79 +1.8 29,513 - Psest_0028 0.80 +0.8 29,513 - Psest_0028 0.80 -1.5 29,513 - Psest_0028 0.80 -0.7 29,513 - Psest_0028 0.80 -1.7 29,513 - Psest_0028 0.80 -0.5 29,513 - Psest_0028 0.80 -1.0 29,524 + Psest_0028 0.81 +0.8 29,611 + -0.5 29,660 - -0.6 29,660 - -0.1 30,550 + +0.6 30,550 + +0.2 30,551 - -1.9 30,551 - -0.6 30,554 + +0.8 30,625 - Psest_0030 0.12 -0.2
Or see this region's nucleotide sequence