Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2719

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2717 and Psest_2718 are separated by 12 nucleotidesPsest_2718 and Psest_2719 are separated by 55 nucleotidesPsest_2719 and Psest_2720 are separated by 141 nucleotidesPsest_2720 and Psest_2721 are separated by 127 nucleotides Psest_2717: Psest_2717 - Succinylglutamate desuccinylase, at 2,906,382 to 2,907,380 _2717 Psest_2718: Psest_2718 - hypothetical protein, at 2,907,393 to 2,907,674 _2718 Psest_2719: Psest_2719 - acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family, at 2,907,730 to 2,908,950 _2719 Psest_2720: Psest_2720 - Enoyl-CoA hydratase/carnithine racemase, at 2,909,092 to 2,909,781 _2720 Psest_2721: Psest_2721 - HD-GYP domain, at 2,909,909 to 2,911,198 _2721 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -1 0 1 2at 2906.938 kb on + strand, within Psest_2717at 2906.939 kb on - strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.508 kb on + strand, within Psest_2718at 2907.535 kb on - strand, within Psest_2718at 2907.577 kb on - strand, within Psest_2718at 2907.676 kb on + strandat 2907.676 kb on + strandat 2907.676 kb on + strandat 2907.677 kb on - strandat 2907.677 kb on - strandat 2907.965 kb on + strand, within Psest_2719at 2908.230 kb on - strand, within Psest_2719at 2908.329 kb on - strand, within Psest_2719at 2908.482 kb on - strand, within Psest_2719at 2908.572 kb on - strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2909.027 kb on + strandat 2909.028 kb on - strandat 2909.187 kb on + strand, within Psest_2720at 2909.188 kb on - strand, within Psest_2720at 2909.188 kb on - strand, within Psest_2720at 2909.251 kb on + strand, within Psest_2720at 2909.251 kb on + strand, within Psest_2720at 2909.252 kb on - strand, within Psest_2720at 2909.252 kb on - strand, within Psest_2720at 2909.693 kb on - strand, within Psest_2720at 2909.763 kb on - strandat 2909.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,906,938 + Psest_2717 0.56 +0.4
2,906,939 - Psest_2717 0.56 -0.1
2,907,024 + Psest_2717 0.64 +0.1
2,907,024 + Psest_2717 0.64 -1.5
2,907,024 + Psest_2717 0.64 +0.4
2,907,025 - Psest_2717 0.64 -0.4
2,907,025 - Psest_2717 0.64 +0.6
2,907,025 - Psest_2717 0.64 +0.3
2,907,183 + Psest_2717 0.80 +0.0
2,907,183 + Psest_2717 0.80 +0.2
2,907,183 + Psest_2717 0.80 -1.0
2,907,183 + Psest_2717 0.80 +0.3
2,907,183 + Psest_2717 0.80 +0.5
2,907,183 + Psest_2717 0.80 +1.0
2,907,183 + Psest_2717 0.80 -0.1
2,907,183 + Psest_2717 0.80 +0.4
2,907,183 + Psest_2717 0.80 +0.9
2,907,184 - Psest_2717 0.80 +0.0
2,907,184 - Psest_2717 0.80 -0.4
2,907,184 - Psest_2717 0.80 -0.0
2,907,184 - Psest_2717 0.80 +0.7
2,907,184 - Psest_2717 0.80 +0.3
2,907,184 - Psest_2717 0.80 +0.2
2,907,184 - Psest_2717 0.80 -0.4
2,907,184 - Psest_2717 0.80 +0.2
2,907,508 + Psest_2718 0.41 +0.2
2,907,535 - Psest_2718 0.50 +0.1
2,907,577 - Psest_2718 0.65 +0.1
2,907,676 + -0.3
2,907,676 + -1.2
2,907,676 + +0.1
2,907,677 - +0.6
2,907,677 - +0.3
2,907,965 + Psest_2719 0.19 -0.7
2,908,230 - Psest_2719 0.41 +2.0
2,908,329 - Psest_2719 0.49 +2.0
2,908,482 - Psest_2719 0.62 +2.0
2,908,572 - Psest_2719 0.69 -0.0
2,908,709 + Psest_2719 0.80 +1.0
2,908,709 + Psest_2719 0.80 +2.0
2,908,709 + Psest_2719 0.80 -0.6
2,908,709 + Psest_2719 0.80 +0.4
2,908,709 + Psest_2719 0.80 -0.0
2,908,709 + Psest_2719 0.80 -0.0
2,908,710 - Psest_2719 0.80 +1.0
2,908,710 - Psest_2719 0.80 +1.0
2,908,710 - Psest_2719 0.80 +2.0
2,908,710 - Psest_2719 0.80 +2.0
2,908,710 - Psest_2719 0.80 -0.6
2,909,027 + -0.4
2,909,028 - -0.8
2,909,187 + Psest_2720 0.14 +0.8
2,909,188 - Psest_2720 0.14 +2.0
2,909,188 - Psest_2720 0.14 -1.6
2,909,251 + Psest_2720 0.23 -0.2
2,909,251 + Psest_2720 0.23 -0.1
2,909,252 - Psest_2720 0.23 -0.6
2,909,252 - Psest_2720 0.23 -0.3
2,909,693 - Psest_2720 0.87 +1.0
2,909,763 - +0.4
2,909,763 - +0.4

Or see this region's nucleotide sequence