Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2717 and Psest_2718 are separated by 12 nucleotides Psest_2718 and Psest_2719 are separated by 55 nucleotides Psest_2719 and Psest_2720 are separated by 141 nucleotides Psest_2720 and Psest_2721 are separated by 127 nucleotides
Psest_2717: Psest_2717 - Succinylglutamate desuccinylase, at 2,906,382 to 2,907,380
_2717
Psest_2718: Psest_2718 - hypothetical protein, at 2,907,393 to 2,907,674
_2718
Psest_2719: Psest_2719 - acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family, at 2,907,730 to 2,908,950
_2719
Psest_2720: Psest_2720 - Enoyl-CoA hydratase/carnithine racemase, at 2,909,092 to 2,909,781
_2720
Psest_2721: Psest_2721 - HD-GYP domain, at 2,909,909 to 2,911,198
_2721
Position (kb)
2907
2908
2909 Strain fitness (log2 ratio)
-1
0
1
2 at 2906.938 kb on + strand, within Psest_2717 at 2906.939 kb on - strand, within Psest_2717 at 2907.024 kb on + strand, within Psest_2717 at 2907.024 kb on + strand, within Psest_2717 at 2907.024 kb on + strand, within Psest_2717 at 2907.025 kb on - strand, within Psest_2717 at 2907.025 kb on - strand, within Psest_2717 at 2907.025 kb on - strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.508 kb on + strand, within Psest_2718 at 2907.535 kb on - strand, within Psest_2718 at 2907.577 kb on - strand, within Psest_2718 at 2907.676 kb on + strand at 2907.676 kb on + strand at 2907.676 kb on + strand at 2907.677 kb on - strand at 2907.677 kb on - strand at 2907.965 kb on + strand, within Psest_2719 at 2908.230 kb on - strand, within Psest_2719 at 2908.329 kb on - strand, within Psest_2719 at 2908.482 kb on - strand, within Psest_2719 at 2908.572 kb on - strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2909.027 kb on + strand at 2909.028 kb on - strand at 2909.187 kb on + strand, within Psest_2720 at 2909.188 kb on - strand, within Psest_2720 at 2909.188 kb on - strand, within Psest_2720 at 2909.251 kb on + strand, within Psest_2720 at 2909.251 kb on + strand, within Psest_2720 at 2909.252 kb on - strand, within Psest_2720 at 2909.252 kb on - strand, within Psest_2720 at 2909.693 kb on - strand, within Psest_2720 at 2909.763 kb on - strand at 2909.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,906,938 + Psest_2717 0.56 +0.4 2,906,939 - Psest_2717 0.56 -0.1 2,907,024 + Psest_2717 0.64 +0.1 2,907,024 + Psest_2717 0.64 -1.5 2,907,024 + Psest_2717 0.64 +0.4 2,907,025 - Psest_2717 0.64 -0.4 2,907,025 - Psest_2717 0.64 +0.6 2,907,025 - Psest_2717 0.64 +0.3 2,907,183 + Psest_2717 0.80 +0.0 2,907,183 + Psest_2717 0.80 +0.2 2,907,183 + Psest_2717 0.80 -1.0 2,907,183 + Psest_2717 0.80 +0.3 2,907,183 + Psest_2717 0.80 +0.5 2,907,183 + Psest_2717 0.80 +1.0 2,907,183 + Psest_2717 0.80 -0.1 2,907,183 + Psest_2717 0.80 +0.4 2,907,183 + Psest_2717 0.80 +0.9 2,907,184 - Psest_2717 0.80 +0.0 2,907,184 - Psest_2717 0.80 -0.4 2,907,184 - Psest_2717 0.80 -0.0 2,907,184 - Psest_2717 0.80 +0.7 2,907,184 - Psest_2717 0.80 +0.3 2,907,184 - Psest_2717 0.80 +0.2 2,907,184 - Psest_2717 0.80 -0.4 2,907,184 - Psest_2717 0.80 +0.2 2,907,508 + Psest_2718 0.41 +0.2 2,907,535 - Psest_2718 0.50 +0.1 2,907,577 - Psest_2718 0.65 +0.1 2,907,676 + -0.3 2,907,676 + -1.2 2,907,676 + +0.1 2,907,677 - +0.6 2,907,677 - +0.3 2,907,965 + Psest_2719 0.19 -0.7 2,908,230 - Psest_2719 0.41 +2.0 2,908,329 - Psest_2719 0.49 +2.0 2,908,482 - Psest_2719 0.62 +2.0 2,908,572 - Psest_2719 0.69 -0.0 2,908,709 + Psest_2719 0.80 +1.0 2,908,709 + Psest_2719 0.80 +2.0 2,908,709 + Psest_2719 0.80 -0.6 2,908,709 + Psest_2719 0.80 +0.4 2,908,709 + Psest_2719 0.80 -0.0 2,908,709 + Psest_2719 0.80 -0.0 2,908,710 - Psest_2719 0.80 +1.0 2,908,710 - Psest_2719 0.80 +1.0 2,908,710 - Psest_2719 0.80 +2.0 2,908,710 - Psest_2719 0.80 +2.0 2,908,710 - Psest_2719 0.80 -0.6 2,909,027 + -0.4 2,909,028 - -0.8 2,909,187 + Psest_2720 0.14 +0.8 2,909,188 - Psest_2720 0.14 +2.0 2,909,188 - Psest_2720 0.14 -1.6 2,909,251 + Psest_2720 0.23 -0.2 2,909,251 + Psest_2720 0.23 -0.1 2,909,252 - Psest_2720 0.23 -0.6 2,909,252 - Psest_2720 0.23 -0.3 2,909,693 - Psest_2720 0.87 +1.0 2,909,763 - +0.4 2,909,763 - +0.4
Or see this region's nucleotide sequence